Plant FIBer expression Database

Potri.011G163400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63890 790 / 0 HISN8, ATHDH HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G465300
[exp]
925 / 0 AT5G63890 790 / 0.0 HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035112
[exp]
803 / 0 AT5G63890 775 / 0.0 HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2)
Lus10031985
[exp]
796 / 0 AT5G63890 752 / 0.0 HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0099 ALDH-like PF00815 Histidinol_dh Histidinol dehydrogenase
Representative CDS sequence
>Potri.011G163400.1 pacid=42781991 polypeptide=Potri.011G163400.1.p locus=Potri.011G163400 ID=Potri.011G163400.1.v4.1 annot-version=v4.1
ATGGACTCCCAGCTTCTATTACTTAACAAGACCAACGCTTTAATCAAACCTCCACTATTCAGTTTCTTTGCTTCTTCAAAACCCAGATACAACCCATCTT
CCAATTTCTCTTTAGGGTGTAAGTTGAAGAGAGTAATGTGTGCAATGAAGTCTTATAGGTTATCAGAACTTAGTAATGCAGAGGTTGAAAGTTTGAAAGC
TCGGCCTCGTATTGATTTCTCTTCCATTTTTGGCATTGTTAATCCTATTGTTGATGATGTTCGTCAAAGAGGCGATGATGCAGTTAAAGATTATACTGCA
AAATTTGACAAAGTCAAATTGGACAAGATTGTCGAGAATGTTTCTGAGCTTCCTGATCCGGAGCTTGAGGCAGCTGTTAGGGAAGCATTTGATGTGGCAT
ATGACAACATATATGCATTTCATCTTGCTCAAAAATCCACTGAAAAAAGCGTTGAGAACATGAAAGGTGTTAGATGCAAACGTGTGGCTCGGAGCATTGG
TTCTGTTGGTCTTTATGTACCAGGGGGAACTGCAGTTTTACCATCCACAGCTCTGATGCTTGCTGTTCCTGCACAAATTGCTGGGTGTAAAACTGTTGTC
CTTGCAACTCCCCCATCTCAGGATGGCAGCATATGCAAGGAGGTACTGTACTGTGCCAAGAAGGCTGGTGTCACTCACATCCTTAAAGCTGGTGGAGCTC
AGGCTATATCTGCCATGGCTTGGGGGACAGATTCTTGCCTCAAGGTTGAGAAGATTTTTGGGCCAGGAAATCAGTATGTGACAGCTGCAAAAATGATTCT
CCAAAACAGTGAAGCAATGATTTCGATTGACATGCCTGCTGGGCCGTCTGAAGTTTTAGTCATTGCTGACAGTTATGCTAGTCCTGTTCATATAGCTGCA
GATTTACTGTCCCAGGCTGAACATGGCCCTGATAGCCAGGTTGTTCTTGTAGTTGCCGGGGATGGTGTGGATATGAAAGCCATTGAAGAGGAAATAAGTA
AGCAATGTCAAAGCTTACCAAGGGGTGAATATGCTTCAAAAGCACTTAGCCACAGTTTCACCGTCTTTGCTCGTGACATGGTTGAGGCTGTCTCTTTTTC
AAACTTGTATGCTCCTGAGCATTTAATCATTAACGTAAAAGATGCAGAGAAGTGGGAGAGCTTTATTGAGAATGCAGGTTCTGTGTTCTTGGGCCCGTGG
ACACCAGAGAGTGTTGGGGATTATGCCAGTGGGACAAACCATGTCCTTCCAACATATGGATATGCACGGATGTATGGTGGGGTATCCTTGGATTCTTTCC
AGAAATACATGACAGTGCAGTCTTTGACAGAGGAAGGTCTCATGAAGCTTGGTCCATATGTGGCAACCATGGCTGAAGTTGAAGGGCTGGACGCCCACAA
GAGAGCTGTAACTCTTAGACTTCAGGGTATTGAAGCCAGACAGGTTTCTAATACGAGATAG
AA sequence
>Potri.011G163400.1 pacid=42781991 polypeptide=Potri.011G163400.1.p locus=Potri.011G163400 ID=Potri.011G163400.1.v4.1 annot-version=v4.1
MDSQLLLLNKTNALIKPPLFSFFASSKPRYNPSSNFSLGCKLKRVMCAMKSYRLSELSNAEVESLKARPRIDFSSIFGIVNPIVDDVRQRGDDAVKDYTA
KFDKVKLDKIVENVSELPDPELEAAVREAFDVAYDNIYAFHLAQKSTEKSVENMKGVRCKRVARSIGSVGLYVPGGTAVLPSTALMLAVPAQIAGCKTVV
LATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTDSCLKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADSYASPVHIAA
DLLSQAEHGPDSQVVLVVAGDGVDMKAIEEEISKQCQSLPRGEYASKALSHSFTVFARDMVEAVSFSNLYAPEHLIINVKDAEKWESFIENAGSVFLGPW
TPESVGDYASGTNHVLPTYGYARMYGGVSLDSFQKYMTVQSLTEEGLMKLGPYVATMAEVEGLDAHKRAVTLRLQGIEARQVSNTR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63890 HISN8, ATHDH HISTIDINE BIOSYNTHESIS 8, hist... Potri.011G163400
[exp]
0 1
AT1G49970 SVR2, NCLPP5, C... SUPPRESSOR OF VARIEGATION 2, N... Potri.001G295266
[exp]
2.44 0.8235
AT3G24320 CHM1, ATMSH1, C... CHLOROPLAST MUTATOR, MUTL prot... Potri.010G065000
[exp]
9.16 0.7679 CHM.1
AT3G42170 BED zinc finger ;hAT family di... Potri.016G026066
[exp]
13.71 0.7771
AT4G38020 tRNA/rRNA methyltransferase (S... Potri.005G147600
[exp]
18.89 0.7527
AT4G26350 F-box/RNI-like/FBD-like domain... Potri.011G024600
[exp]
26.38 0.7615
AT1G63855 Putative methyltransferase fam... Potri.005G109000
[exp]
33.91 0.7706
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.007G109400
[exp]
46.47 0.6693
AT4G27220 NB-ARC domain-containing disea... Potri.001G426660
[exp]
47.32 0.7211
AT1G66520 PDE194 pigment defective 194, formylt... Potri.017G123300
[exp]
48.78 0.6952
AT4G18460 D-Tyr-tRNA(Tyr) deacylase fami... Potri.011G062200
[exp]
52.45 0.6853

Potri.011G163400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.