Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20910 777 / 0 CRM2, HEN1 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2) AT4G20920 437 / 2e-140 double-stranded RNA-binding domain (DsRBD)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G465500 [exp] 1560 / 0 AT4G20910 857 / 0.0 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023257 [exp] 1018 / 0 AT4G20910 818 / 0.0 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2) Lus10038546 [exp] 1003 / 0 AT4G20910 806 / 0.0 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2) Lus10006035 [exp] 81 / 3e-16 AT1G76480 147 / 1e-43 unknown protein Lus10008393 [exp] 55 / 6e-08 AT3G52280 139 / 3e-39 general transcription factor group E6 (.1.2) Lus10000530 [exp] 67 / 6e-07 AT5G22450 71 / 3e-14 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13847 [poplar] [flax] Methyltransf_31 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.011G163600.4 pacid=42781380 polypeptide=Potri.011G163600.4.p locus=Potri.011G163600 ID=Potri.011G163600.4.v4.1 annot-version=v4.1 ATGCGTGGTTGTGATTTTTATGAGAACTTTTGGAGGTTGCTTATGGAAATTGGAGTGAAGAAGACAATTTTTTCACCTAAGGCTATCATAAACCAGAAGT TTGGTAGCAAGGCATGTTATAAGGTAGAGGAGGTACAGGAGGAGTCAACTCAGAATGGGTTCCCAGGATTGGCAATTCCTCAGAAAGCTCCTCTTTTTCG GTGCCAGCTAGAGCTTCCAGAATTTACTGTTGTTTCAGATATATGTAGAAAGAAGAAGGATGCCGAGCAATCTGCAGCAGATTTGGCTTTAAAAAGGCTA GGCCACCATTCCGTTGCTGAAAATCCATCTGATAAGGATCCTTGTGATGCTTTGATTGATCAAATCAAATATCTATTTTCAGACGAGTTCTCCCTACCTC TTCATCCATTGAGGGGTCACCTTAGAGCAGCTTTGCTGAGAAGAGGTGATCTTTATGGTCTGGTACCTGCTTCTGTCATTACTACCTGTGATACAAAGAC GAGTAATCTGTGTAAATTACTCAACCCTGAGGTGGAATTAAAACCTTTTTTGGCTTTGTCATTAATTATGAGGACTATACCAAGATTATCAGGCTGTGTT ACATCCAAGGGGCAGCTTTCAATTCAGAAGCAAAATCCATATCCCACTGAGATCATAGAGTCATCAGATATCCAGCAATCTGATTCCCCAGAAAGCATAT TGGTTAAAGCAATACAAATTCCAGCTTCACTGGATAAGACTGTTCAGCCAGTGACTCTTAATATTTCATCCGCCGGATATTACCTGGATGTTATTGCAGA ACAACTTGGTGTAACAGATGCCAGCAAGGTTTTGCTCTCAAGGACTATTGGTAAAGCTTCCTCAGAGACCAGATTGTATTTTGCTGCTTCTGAGTCACTT GTGATGGATCTGTTGTCGGACCTTGCAAATGTGAAAGATTTTCATGTGGAAGGACCTCCAAATGCAAGGGCAAGTTACTTCTGTGGTCAAGGAATATACG GTGATGCAATCATGGCTTCCATTGGATACACATGGAGGTCTAAAGAACTTTTCCATGAACACGTGTCCCTCCAATCATATTACAGGATGCTTATAAGCAA GATACCTAGTGGAAATTACAAGTTGTCTAGAGAAGCAATACTTGCAGCAGAGTTGCCCTCAGTATTCACTACTAAAGCAAATTGGAGAGGTTCCTTCCCA AGGGAAATCCTATTCGCATTCTGCCATCAGCATAGGCTATCTGAGCCTATCTTCTCAACTACAAGTGTTCCTTTAAAGGCATCATGCGAGTTACTGAGAT CACAGAAGAAGTTGAAGGTTACTGAGGTAGCTGGACTTGCGACTGAATATGCAAATGGAGGAGGTTTAAATGCGGGCGATGGAGAATCAGTAGGACTGGA AAGCAACTTTAGATGTGAAGTAAAAGTATTTTCCAAGGGTCGGGATTTGATCATAGAGTGTTCCCCTAAGGAGATTTATAGGAAGCAGACTGATGCTACC CACAGTGCTTCTCTGAAAGTTCTCTCATGGCTGAATGCATATTTTAAGGACCTTGGCATGCCTTTGGAGAAGCTAAATTGCTCTGCTGATGCCCTTGACA TTAGTTTTTCTCTTGAAAACTTTCATAAAGAGTTTGCTTTATCCCAATCCATTCATAATGTTCAGCAAAGTGGGACTCAAGGATCCAAATTACCAGAATC AAAAAGTACTGATATGCAATATACTTTGTCAGGACAAGATGTTTGCTTACCTAACATTGAAGGTTCAGATTCTGGTGTTTTCCCCTCTAATGGATCTTTG TTGTGTATAAGTTACTCTGTATCCTTAGTGACAGAAGGTGGACATACAAAAGAGCTTATTGAAAGTAAAGATGAATTTGAGTTTGAGATGGGGGCTGGAG CAGTGATTTCTGCTCTTGAAGCAGTTGTTACCCAAATGTCAGCTGGTCAATGTGCTCATTTCAACATGAATCTGCCCCCTCAAGAGTTCATTCTAGCTGC AGTTGATGATCCTGGAAGGATTCACTCATTGTTATCCTCAGAAGCTTGCTGGTTGGAATACCATGTAACGTTGTTGCGTGTGACAAAACCACCAGAAGAA AGAATGGAGCAGGCTCTTTTCAGCCCTCCGCTCTCAAAGCAACGGGTGGAATATGCTGTGCAGCATATCAAAAAATCTTGTGCTGCTACTTTGGTTGACT TTGGATGCGGCTCTGGAAGTTTATTGGATTCTCTGTTAGATTACCCAACTTCACTAGAAAAGATTGTTGGTGTTGACATATCACAGAAGAGTCTTGGCCG TGCTGCAAAGGTACTGCATGCAAAACTGAGCTCAAAGTCAGATGCAGGCATCAAATCTGCTATTCTTTATGATGGTTCCATCACAGAATTTGAACCTCAA TTGTGTGGATTTGATATTGGCACTTGCTTAGAGGTAATAGAGCATATGGAGGAGGACCAGGCCTGTCGTTTTGGTGATATAGCATTGAGTTATTTTCGTC CAAAGGTTCTTATAGTTTCCACCCCAAATTACGAATACAACGTGATTCTACAAAGATCTAGTCCTGTAACTCAAGAAGAATACCCAGACGAGAAAAGCCA GTCAGAGTCATGTAAATTTCGCAACCATGACCACAAGTTTGAGTGGACAAGAGAGCAGTTCAACCACTGGGCATCTGAACTAGCGAAGAAGCACAATTAC AGCGTCGAGTTCAGTGGGGTTGGTGGTTCTGGTGATGTGGAACCAGGTTTTGCTTCTCAGATAGCCGTCTTTAAACAGGAGAGCCTGCTTGATGAAGATG ATCTTCTGACAAAACAAAATTCATCTCAGCATTGCAAAGTTGTATGGAATTGGAACTGCGCTGACAGATCGGTAGTCGGTACCCTCTCTAACAAGTAA
AA sequence Show only first row Show all	>Potri.011G163600.4 pacid=42781380 polypeptide=Potri.011G163600.4.p locus=Potri.011G163600 ID=Potri.011G163600.4.v4.1 annot-version=v4.1 MRGCDFYENFWRLLMEIGVKKTIFSPKAIINQKFGSKACYKVEEVQEESTQNGFPGLAIPQKAPLFRCQLELPEFTVVSDICRKKKDAEQSAADLALKRL GHHSVAENPSDKDPCDALIDQIKYLFSDEFSLPLHPLRGHLRAALLRRGDLYGLVPASVITTCDTKTSNLCKLLNPEVELKPFLALSLIMRTIPRLSGCV TSKGQLSIQKQNPYPTEIIESSDIQQSDSPESILVKAIQIPASLDKTVQPVTLNISSAGYYLDVIAEQLGVTDASKVLLSRTIGKASSETRLYFAASESL VMDLLSDLANVKDFHVEGPPNARASYFCGQGIYGDAIMASIGYTWRSKELFHEHVSLQSYYRMLISKIPSGNYKLSREAILAAELPSVFTTKANWRGSFP REILFAFCHQHRLSEPIFSTTSVPLKASCELLRSQKKLKVTEVAGLATEYANGGGLNAGDGESVGLESNFRCEVKVFSKGRDLIIECSPKEIYRKQTDAT HSASLKVLSWLNAYFKDLGMPLEKLNCSADALDISFSLENFHKEFALSQSIHNVQQSGTQGSKLPESKSTDMQYTLSGQDVCLPNIEGSDSGVFPSNGSL LCISYSVSLVTEGGHTKELIESKDEFEFEMGAGAVISALEAVVTQMSAGQCAHFNMNLPPQEFILAAVDDPGRIHSLLSSEACWLEYHVTLLRVTKPPEE RMEQALFSPPLSKQRVEYAVQHIKKSCAATLVDFGCGSGSLLDSLLDYPTSLEKIVGVDISQKSLGRAAKVLHAKLSSKSDAGIKSAILYDGSITEFEPQ LCGFDIGTCLEVIEHMEEDQACRFGDIALSYFRPKVLIVSTPNYEYNVILQRSSPVTQEEYPDEKSQSESCKFRNHDHKFEWTREQFNHWASELAKKHNY SVEFSGVGGSGDVEPGFASQIAVFKQESLLDEDDLLTKQNSSQHCKVVWNWNCADRSVVGTLSNK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Potri.011G163600 [exp]	0	1
AT2G31320		ATPARP2	poly(ADP-ribose) polymerase 2 ...		Potri.002G041300 [exp]	7.21	0.8277
AT5G19910		MED31	SOH1 family protein (.1.2)		Potri.012G113400 [exp]	9.38	0.8212
AT3G45100		SETH2	UDP-Glycosyltransferase superf...		Potri.016G130000 [exp]	13.41	0.7860
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.014G075901 [exp]	13.74	0.7713
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Potri.013G088600 [exp]	16.30	0.7732	XPO1.2
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.005G147700 [exp]	16.79	0.7948
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.011G043100 [exp]	17.20	0.7547	Pt-ATMRP12.3
AT5G36930			Disease resistance protein (TI...		Potri.003G014200 [exp]	18.89	0.7923
AT1G15780			unknown protein		Potri.003G013000 [exp]	23.23	0.7958
AT5G50780			Histidine kinase-, DNA gyrase ...		Potri.012G102800 [exp]	25.92	0.7826

Compare expression of checked genes

Potri.011G163600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.