Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GER2.27
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) AT5G39160 255 / 2e-86 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 254 / 2e-86 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT3G05950 252 / 2e-85 RmlC-like cupins superfamily protein (.1) AT5G39110 248 / 9e-84 RmlC-like cupins superfamily protein (.1) AT5G39120 239 / 2e-80 RmlC-like cupins superfamily protein (.1) AT5G39150 239 / 2e-80 RmlC-like cupins superfamily protein (.1) AT5G39180 239 / 3e-80 RmlC-like cupins superfamily protein (.1) AT3G04200 232 / 2e-77 RmlC-like cupins superfamily protein (.1) AT4G14630 229 / 2e-76 GLP9 germin-like protein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G162932 [exp] 384 / 1e-137 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 382 / 5e-137 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163216 [exp] 347 / 7e-123 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 345 / 3e-122 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.001G465100 [exp] 342 / 3e-121 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.001G464100 [exp] 280 / 9e-97 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464000 [exp] 280 / 2e-96 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.011G162200 [exp] 278 / 1e-95 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.013G052100 [exp] 268 / 1e-91 AT5G39110 285 / 2e-98 RmlC-like cupins superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035185 [exp] 310 / 2e-108 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 308 / 3e-107 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10032016 [exp] 306 / 1e-106 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10032015 [exp] 304 / 4e-106 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10032017 [exp] 296 / 1e-101 AT3G05950 252 / 5e-84 RmlC-like cupins superfamily protein (.1) Lus10035278 [exp] 293 / 1e-101 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10030048 [exp] 290 / 3e-100 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10034254 [exp] 287 / 3e-99 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10026962 [exp] 286 / 5e-99 AT3G05950 251 / 6e-85 RmlC-like cupins superfamily protein (.1) Lus10035279 [exp] 284 / 5e-98 AT5G39160 244 / 2e-82 RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF07883 [poplar] [flax] Cupin_2 Cupin domain
Representative CDS sequence Show only first row Show all	>Potri.011G163800.1 pacid=42781011 polypeptide=Potri.011G163800.1.p locus=Potri.011G163800 ID=Potri.011G163800.1.v4.1 annot-version=v4.1 ATGGCTTCTTCCATTCTTTTCTTCGGATTCCTTGCTTTTTCCTTGAGCTATGTCCTAGCATCGGATCCAAGCTCCCTTCAAGATTTCTGTGTGGCAGATG AAAACAGTAATGTGATAGTGAATGGTTTGGCTTGCAAGGATCCCAAAGAGGTTCAAGCTGATGACTTCTCCTTCAGTGGACTTCACTTGGCAGGCAACAC TTCAAATGCTGTAGGGTCTAGGGCAACCACAGTAAACGTAGCCCAGATACCAGGGCTTAACACACTTGGAATCTCTCTTGTTCGCATCGACTACGCACCA TGGGGCATTAACCCTCCTCACACACACCCTCGTGGATCCGAAATCTTGACTGTCATTGAAGGCAGTCTTGAGGTTGGGTTCGTGACATCCAGCCCTGAAA ACCGTCTCATCACAAAAGTTCTACAAAAGGGTGATGTGTTTGTATTTCCTATTGGTCTCGTTCACTTTCAGAGAAATGTTGGAAATGGCAACGCCGTAGC CATTGCAGCTCTGAGCAGCCAAAATCCAGGCGTCATTACCATTGCCAATGCGATGTTTGGCTCCACCCCAGAGATCCCAAGTGACATTCTAGTGAAGGCT TTCCAGTTGGACAAGAATGTTGTCAACTACCTTCAATCCAGGTTCTAA
AA sequence Show only first row Show all	>Potri.011G163800.1 pacid=42781011 polypeptide=Potri.011G163800.1.p locus=Potri.011G163800 ID=Potri.011G163800.1.v4.1 annot-version=v4.1 MASSILFFGFLAFSLSYVLASDPSSLQDFCVADENSNVIVNGLACKDPKEVQADDFSFSGLHLAGNTSNAVGSRATTVNVAQIPGLNTLGISLVRIDYAP WGINPPHTHPRGSEILTVIEGSLEVGFVTSSPENRLITKVLQKGDVFVFPIGLVHFQRNVGNGNAVAIAALSSQNPGVITIANAMFGSTPEIPSDILVKA FQLDKNVVNYLQSRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39130			RmlC-like cupins superfamily p...		Potri.011G163800 [exp]	0	1	GER2.27
AT4G23885			unknown protein		Potri.003G140300 [exp]	1.41	0.8896
AT3G05950			RmlC-like cupins superfamily p...		Potri.011G163200 [exp]	2.44	0.8671	Pt-GER2.29
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Potri.005G217000 [exp]	3.60	0.8424
AT1G64385			unknown protein		Potri.003G139400 [exp]	6.48	0.8335
AT3G05950			RmlC-like cupins superfamily p...		Potri.011G162932 [exp]	9.48	0.8282
					Potri.007G031650 [exp]	13.00	0.7816
AT5G12260			unknown protein		Potri.009G066900 [exp]	15.74	0.8675
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Potri.001G147000 [exp]	21.09	0.8575
AT1G52855			unknown protein		Potri.019G104300 [exp]	27.62	0.7944
AT1G29270			unknown protein		Potri.004G060800 [exp]	27.92	0.8232

Compare expression of checked genes

Potri.011G163800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.