Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34730 432 / 2e-138 myosin heavy chain-related (.1.2) AT5G14990 58 / 3e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G466800 [exp] 1016 / 0 AT2G34730 390 / 7e-123 myosin heavy chain-related (.1.2) Potri.010G222200 [exp] 87 / 5e-17 AT5G14990 211 / 2e-58 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023264 [exp] 622 / 0 AT2G34730 361 / 1e-111 myosin heavy chain-related (.1.2) Lus10038540 [exp] 607 / 0 AT2G34730 360 / 2e-111 myosin heavy chain-related (.1.2) Lus10036529 [exp] 62 / 1e-09 AT5G14990 177 / 2e-49 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G164400.5 pacid=42781415 polypeptide=Potri.011G164400.5.p locus=Potri.011G164400 ID=Potri.011G164400.5.v4.1 annot-version=v4.1 ATGGGGAGTGAAGAGGTTTTGGAGAATTCTACTCTTATGGATGTTAGTATGAGTTCATGCAATGGAACAATGGTCCAGCACACAAATGGCATCGAGGAGA GTGAGAATCTAGGTGCTGATCTACTTAAAGATTTTGATTTGTGCTGGGAAGATATTGAGGATCGATTGACCGTTTCTAGAATGGTTAGTGATTCGGTCAT AAAGGGCATGGTATCTGCAGTTGAACAAGAGGCAGTGCAGAAGATTGCTCAGAAAGAATTGGAGTTGACTAGATTGAAGGAAGAATTGCATCTTTACCAC GTGGGCGCAGATGAAAATGAATCTGTGTGTTCAGGGATGTGCCAAGAGCAAAAATATAGAAAAAATGGTCTTTATTCTACCCATTCAGATACATTTGTGG AGCAAGCTATGTTACAAGAATCTTTGGAAAATCTTAAAATTGCAGTTAAAGGGAAGCTCAAGAAGCTCAAGAAAGAAATTCACAAGGTTAAAGGGTCCTG TTCTATGAGGAGGAATTCAGCTTCTGAAATTGTGGGTTTGAGTGGTATTCTTCCAGAAAAGGTGCCTGATAAATGGAGTGATGTGGACAGAATGCTTGAG GATCTAGGAACTACTCTGGACTCTTTCTACAAACACACAGATGATATGGTCCGTTTCTCCAAGTTATCACTCTTTGAGTGGCAGCAGGAGAAGGAGTTTC AAGCAGAAATTGAAGGGCTGGTTATCCAGAATTGTATTAGGGGTCTCCAAGAAGAGTTTGAGCAGAGTTTGTGGGATCAAAATACCCAGTTTTTTGGCAA TGTAAGTGCAAGTTGGCTTGAAAAGGTGAAAGAGCTTTCAAGTTTACGTCAGGAATTGGATGCCATCGCAAAGTCACTGTTTGTATCTGAAAGCGGTCTG TTAATTTCTCATGGTTCCTTTGAGCACCGGAAGTCTTCAGGTCATCATGTTTCAAATGGAAATCACGATGAGTCTATAATTACTATGCCAGAAAATTTGG AAGCTGCCCAACTAAAGCACATGAACAGGGAAGAATTGTTTCATTATCTCAAGACTGAGATGACTAAAATGAAGAGACACCATGAGTCAAAAGTGCAAGA GATGACGGAAGAAATTTTCAGCCTCAAGAGGGAGTACTTAAAAGAAAGGGGATCTTCTTTGCCAGTGAGGAAGGATAAGGACTTAGACATACTGAGGAAA AAGATCGCTGAGGTCATTTTGAAATTGGATGACATTCTTGTTGAAAATGAGAAAGTGCCTTCAGCGAGCAACAATGCAGAGAGTCTTGACAATATGAAGG ACAGACTTGAATCCCTTCGTTTAGAAAACCATGAACTACGAGACTTGCTTGCACAAAAGATAAGGGAAATAAAGCTCCTTTCCTCACAAGTTTCTGATGC TACTGAGAAAATGTCACAACATTCTCTGACAGAGGTAAACTTGTTGAGAATAATCACAAATCTTAAAAGTTTAATAGAAGATACACATGCTGAAACTACA ATCAGTGAAGATCTGCATAAAATACTTCTCAAGGAGTTCATGGGCCAGATCAAATGCTTCACTAAAGAATCAGACCTGGAGTATGATTTCATGGAGGGAA TTTATGAAATTATATTCAGAGAAGCAGCTCAAAATGCCAAATCTGCTAGCAAATTGGAAATTGAAGATTCAGATATGGAGTCTATTATTACACAAGGGCT GTTGGAAGTTGGTCTTCAAGAGGCCTTCAAGGAAGCTGAGGAGAAACTTGGTAGTTTGAACCAGAAATATGTTGATGAAAATAAAGTTCGATTGACGCTT GAGATGGAAGCTATGGAAAAAGAAAAGGCATTAAGAATGAGCATTGCAGAGAAAGAAAAACTAGACCAAGATATACACTTGCTAACAGCAACAATTCAAG AGAAGGACAAACTAGTGCGGGAATCAACAGATGCGTTGGAAAAGGAGAAGGAAAATTTAGAGTTGGCTTCTAGAGAGCTTGGCAATTTAAGGGCTCAGAC AAGTCAGCAGCGTCTATTAATTTCACAAAACAGTGAAGAATCTGAGATCATTAAACATGATTTGCTCGAGGCTTTGGACAAAAACAAACTTTGTGAAGAG GAGATTAGCAAGTTGCAAGAGAAGATTCAGCTAGTGACAGAGAACTTGAGGGAAGCTACTGAAGAGAAAAGCATGCTGCTTGCTGTTTCTCAAGAGAAGC AATCATTGGTTGAAGCAAGAGAAAGGGAGCACAGGGAGCAACTGGATTCAATAGTTGTTCTTGTCAATGGATTATCAAGAGCAGTTACTGATTTTGAAAG CAGAGCCACAAAAGAAATCAAAAGGAGTAGCTTGAGGCTGGAAAATCTTAGTTCACAATCGGGTTCTCTTATTCAGAAGGCTGGTATACTTACAAGAATG GGATTTCTGCACAAGCAGAAGTTGGAAAGTAGGTGTTCTGACCTTCAAAAGGCTGAAGCTGAGGTTGATCTTTTGGGTGACGAGGTAGAAAATCTTCTAA GCCTCCTTGAAAAGATATACATAGCACTGGATCATTATTCTCCGATATTGAAACATTATTCTGGAATTACTGAGATTCTAAAGCTAGTTAGAAGAGAATT GAATGGAGAATCTATGAAACCAGTTTGA
AA sequence Show only first row Show all	>Potri.011G164400.5 pacid=42781415 polypeptide=Potri.011G164400.5.p locus=Potri.011G164400 ID=Potri.011G164400.5.v4.1 annot-version=v4.1 MGSEEVLENSTLMDVSMSSCNGTMVQHTNGIEESENLGADLLKDFDLCWEDIEDRLTVSRMVSDSVIKGMVSAVEQEAVQKIAQKELELTRLKEELHLYH VGADENESVCSGMCQEQKYRKNGLYSTHSDTFVEQAMLQESLENLKIAVKGKLKKLKKEIHKVKGSCSMRRNSASEIVGLSGILPEKVPDKWSDVDRMLE DLGTTLDSFYKHTDDMVRFSKLSLFEWQQEKEFQAEIEGLVIQNCIRGLQEEFEQSLWDQNTQFFGNVSASWLEKVKELSSLRQELDAIAKSLFVSESGL LISHGSFEHRKSSGHHVSNGNHDESIITMPENLEAAQLKHMNREELFHYLKTEMTKMKRHHESKVQEMTEEIFSLKREYLKERGSSLPVRKDKDLDILRK KIAEVILKLDDILVENEKVPSASNNAESLDNMKDRLESLRLENHELRDLLAQKIREIKLLSSQVSDATEKMSQHSLTEVNLLRIITNLKSLIEDTHAETT ISEDLHKILLKEFMGQIKCFTKESDLEYDFMEGIYEIIFREAAQNAKSASKLEIEDSDMESIITQGLLEVGLQEAFKEAEEKLGSLNQKYVDENKVRLTL EMEAMEKEKALRMSIAEKEKLDQDIHLLTATIQEKDKLVRESTDALEKEKENLELASRELGNLRAQTSQQRLLISQNSEESEIIKHDLLEALDKNKLCEE EISKLQEKIQLVTENLREATEEKSMLLAVSQEKQSLVEAREREHREQLDSIVVLVNGLSRAVTDFESRATKEIKRSSLRLENLSSQSGSLIQKAGILTRM GFLHKQKLESRCSDLQKAEAEVDLLGDEVENLLSLLEKIYIALDHYSPILKHYSGITEILKLVRRELNGESMKPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34730			myosin heavy chain-related (.1...		Potri.011G164400 [exp]	0	1
AT1G68710			ATPase E1-E2 type family prote...		Potri.012G058000 [exp]	28.03	0.7529	Pt-ALA9.2
AT5G05570			transducin family protein / WD...		Potri.016G117800 [exp]	30.46	0.7328
AT1G30755			Protein of unknown function (D...		Potri.002G021400 [exp]	39.64	0.7484
AT1G04230			Protein of unknown function (D...		Potri.008G160800 [exp]	51.26	0.6826
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.006G074400 [exp]	85.86	0.6974
AT1G29220			transcriptional regulator fami...		Potri.011G068100 [exp]	95.09	0.6619
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.019G020800 [exp]	97.97	0.7050
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Potri.003G129300 [exp]	101.19	0.7057
AT4G08310			unknown protein		Potri.005G176400 [exp]	103.90	0.7027
AT4G31880			unknown protein		Potri.018G020400 [exp]	119.84	0.6940

Compare expression of checked genes

Potri.011G164400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.