Plant FIBer expression Database

Potri.011G164500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30540 524 / 0 Actin-like ATPase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G466900
[exp]
691 / 0 AT1G30540 518 / 0.0 Actin-like ATPase superfamily protein (.1)
Potri.014G143500
[exp]
518 / 0 AT1G30540 473 / 2e-168 Actin-like ATPase superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023262
[exp]
545 / 0 AT1G30540 495 / 9e-177 Actin-like ATPase superfamily protein (.1)
Lus10038542
[exp]
544 / 0 AT1G30540 493 / 5e-176 Actin-like ATPase superfamily protein (.1)
Lus10033600
[exp]
524 / 0 AT1G30540 491 / 3e-175 Actin-like ATPase superfamily protein (.1)
Lus10017642
[exp]
521 / 0 AT1G30540 489 / 2e-174 Actin-like ATPase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0108 Actin_ATPase PF01869 BcrAD_BadFG BadF/BadG/BcrA/BcrD ATPase family
Representative CDS sequence
>Potri.011G164500.1 pacid=42782297 polypeptide=Potri.011G164500.1.p locus=Potri.011G164500 ID=Potri.011G164500.1.v4.1 annot-version=v4.1
ATGAATAATTATGGGGAAAGCAATGGAGATTTAAATGTCCATGAAAAACAAGTTGAAGGTCATGATCACTGTGAAAATGGAGATGGGTCTGATAATAGAG
TCATTTTGGGGATTGATGGTGGGACTACTTCAACTGTTTGTGTCTGCATTCCTTTATTTTCTTCCTCAAAATCCCTCCCTAACCCTCCTCCTATCCTTGG
ACGTGCTGTTTCTGGTTGCTCCAATCATAACAGCGTTGGAGAAACTGCTGCCAGGGACACATTGGAAGAGGTTATGGCTGAAGCCCTCTCAAAATCAGGT
TCTGATTGGTCGGCTGTTCATGCTGTTTGTTTAGGTGTTTCTGGTGTTAACCATCCAACTGATCAAGAAAGGATACTAAACTGGCTAAGAGAAATATTTC
CTAGCCATGTGAAGTTGTATGTTCAGAATGATGCTGTTGCTGCTCTTGCAAGTGGGACCATGGGAAAGCTTCATGGCTGTGTATTAATTGCTGGTACGGG
GTGCATTTCTTATGGATTTGCTGAAGATGGCAGAGAAGCTCGAGCTTCAGGTGCAGGACCTGTCCTAGGTGATTGGGGGAGTGGATATGGAATTGCTGCA
AAGGCACTGACTGCAGTAATAAGGGCTCATGATGGTCGTGGTCCACAGACAATGCTAACAAATAAGATTTTGAAGGCACTCAGTCTCTCGTCTCCTGATG
AACTTATCGGGTGGACTTATGCTGATCCATCTTGGGCACGCATTGCAGCACTTGTTCCAGAAGTGGTATCTTGTGCAGAAGCTTGCGATCAAGTAGCAAC
TAAGATCTTGGTCAATGCAGTCCAGGACTTGGCTCTAAGTGTGAAGGCTGTTGTCCAAAGACTTCAGTTGTGCGGTGAAGATGGAAATGGTTCTTTCCCT
GTTGTGATGGTTGGTGGTGTTCTCGAAGCTAACAGGACTTGGGATATTGGGAAAGAAGTTATGAAATGTATTCAGGAGCAGTTTCCTGGGGCTCATCCCA
TTAGACCACAGGTCGAACCAGCAGTTGGGTCTGCGTTGCTGGCCTGGAATTTCTTGATGAAAGAATCAACAGAGAGCTCCCATAGCTGA
AA sequence
>Potri.011G164500.1 pacid=42782297 polypeptide=Potri.011G164500.1.p locus=Potri.011G164500 ID=Potri.011G164500.1.v4.1 annot-version=v4.1
MNNYGESNGDLNVHEKQVEGHDHCENGDGSDNRVILGIDGGTTSTVCVCIPLFSSSKSLPNPPPILGRAVSGCSNHNSVGETAARDTLEEVMAEALSKSG
SDWSAVHAVCLGVSGVNHPTDQERILNWLREIFPSHVKLYVQNDAVAALASGTMGKLHGCVLIAGTGCISYGFAEDGREARASGAGPVLGDWGSGYGIAA
KALTAVIRAHDGRGPQTMLTNKILKALSLSSPDELIGWTYADPSWARIAALVPEVVSCAEACDQVATKILVNAVQDLALSVKAVVQRLQLCGEDGNGSFP
VVMVGGVLEANRTWDIGKEVMKCIQEQFPGAHPIRPQVEPAVGSALLAWNFLMKESTESSHS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G30540 Actin-like ATPase superfamily ... Potri.011G164500
[exp]
0 1
AT2G32080 PUR ALPHA-1, PU... purin-rich alpha 1 (.1.2) Potri.003G224000
[exp]
5.09 0.7582
AT1G80460 GLI1, NHO1 nonhost resistance to P. s. ph... Potri.003G030900
[exp]
26.36 0.7331 Pt-NHO1.1
AT4G36960 RNA-binding (RRM/RBD/RNP motif... Potri.005G138600
[exp]
29.15 0.6648
AT5G28770 bZIP BZO2H3, ATBZIP6... Arabidopsis thaliana basic leu... Potri.013G040700
[exp]
33.57 0.7191 BZO2.2
AT4G16130 ATISA1, ARA1 arabinose kinase (.1) Potri.018G003100
[exp]
45.95 0.6792
AT4G09760 Protein kinase superfamily pro... Potri.002G063700
[exp]
95.19 0.6762
AT5G09680 RLF reduced lateral root formation... Potri.001G263800
[exp]
109.22 0.6615
AT3G14470 NB-ARC domain-containing disea... Potri.017G144481
[exp]
137.66 0.6421
AT4G08290 nodulin MtN21 /EamA-like trans... Potri.005G176100
[exp]
143.09 0.6555
AT2G23420 NAPRT2 nicotinate phosphoribosyltrans... Potri.005G139800
[exp]
171.92 0.6445

Potri.011G164500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.