Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30570 1085 / 0 HERK2 hercules receptor kinase 2 (.1) AT5G54380 644 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT3G46290 641 / 0 HERK1 hercules receptor kinase 1 (.1) AT5G28680 631 / 0 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT5G59700 626 / 0 Protein kinase superfamily protein (.1) AT3G04690 620 / 0 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT3G51550 615 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT2G21480 614 / 0 Malectin/receptor-like protein kinase family protein (.1) AT4G39110 613 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G61350 601 / 0 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G467000 [exp] 1451 / 0 AT1G30570 1090 / 0.0 hercules receptor kinase 2 (.1) Potri.011G128000 [exp] 660 / 0 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.001G405500 [exp] 654 / 0 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.008G105500 [exp] 646 / 0 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.009G026600 [exp] 644 / 0 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.016G138700 [exp] 644 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 642 / 0 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 635 / 0 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.001G234200 [exp] 628 / 0 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042844 [exp] 655 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10028140 [exp] 655 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10037887 [exp] 650 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10014185 [exp] 650 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10016907 [exp] 592 / 0 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10017478 [exp] 587 / 0 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 583 / 0 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10028805 [exp] 582 / 0 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10021998 [exp] 568 / 0 AT3G04690 929 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10042537 [exp] 568 / 0 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.011G164700.2 pacid=42781841 polypeptide=Potri.011G164700.2.p locus=Potri.011G164700 ID=Potri.011G164700.2.v4.1 annot-version=v4.1 ATGGAGAAGGTCCAGGGAAGAGGGATTTGGGGTCTTGTATTTCTGATCATGGTGTTCCTATCTGTTAGCAGTAGAGAAGCTCAGTCAAAGCCTGTTTTGG TAAACTGTGGTGCAAATAGCAGTGTTAATGTGGATGGTAGGAGATGGATTGGTGATTTGGCCCCAAATGATAATTTCACTGTCAGTTCTCCTGGTGTTGC TGCTACTGATTCAAATGCTGATGGCAATTCAACCTTAGGGCCACTCTACAAAACTGCCCGGATTTTCAATGCTTTGAATTATACTTTTGCTGGAATGCAG GGAAACTACTTTCTTAGACTCCATTTTTGTCCATTCCCTTTTGAGAATTATAATGTCAATGAGTCCTCGTTTAGTGTCGTGGCTAATGGTCTGAAACTAA TGACTGAGTTCAATGTTCCGGTCGAGATTTCAGACAAGAATTTACACTTGCAGAATTCCAACAGCAATTCAAGTTCTTTGTCCTTGGTCAAAGAGTATAT TCTAACAATCAATGATGTTCTTGTGGTTGAATTTGTTTCATCTAGGGGATCATTCGGGTTCATAAATGCCATAGAGGTTGTCCCTGTGGTTGGCACACTT TTTGCAGACTCAGTTAGTAAAGTGGGTGGAAGTAATGCCAATTTCAATGTAAGCGGACGGGGGATTGAAACTATGTATCGGTTGAATATTGGGGGACAGG AGATCAAAACTAATCAAGATTCAGATCTTTGGAGGAAATGGGAAATGGATTCCAGCTACATGATTACAGCAGATGCTGGTGTTGAAATCAGGAATACTTC TAATGTCACTTATGCATCGAACAATGATTCCTCGGTGGCTCCACTTCTTGTATATGAAACAGCAAGAATCATGTCCAACACAGAAGTCTTGGAGAAAAAG TTTAACATGTCATGGAAATTCGAAGTAGATCCTGATTTTGATTATTTAATCCGGTTACATTTTTGTGAGCTGGTATATGACAAAGCAAACCAGAGGATTT TCAGGGTCTATATAAACAACAAGACAGCTGCTGATAGCTTTGATGTTTATGTACGGGCAGGAGGGAAGAACATAGCATATCATCAGGATTATTTTGATAC GGTTTCCTCCAAGACCAACACCCTTTGGGTCCAACTGGGTCCTGACACTGCAGTTGGTGCTTCAGGAACTGATGCTCTCTTGAACGGACTGGAGATTTTC AAGCTGAGCCGAAGTGCGAATCTTGCATATGCTGACAGAATTGATTCAACTGAGAAATCTGGAAGTCATTCAAAATCTTGGATTCTCTGGTTGGGGGTTG GAGCAGGTGTAGCTTCTGTCCTCATTATTGCAATTACATTTACTTGCATCTTTTGCTTCGGCAAAAATCGAAGAAAACAAATGAGTGATGCCAAAGACAA CCCTCCTGGATGGCGGCCACTATTCATGCATGGTGCTGTTGTAAGTAGCATTGCTAATAATAAGGGAGGGGTCCGTTCTCTAAATGGATCGTTGGCAGCG TCTACTAGAGTTGGCAGGCGTTTCACCTTGTCAGAGATTCGTGCGGCAACGAACAATTTTGATGACAGTTTGGTGATAGGAGTTGGAGGCTTTGGTAAAG TATACAGTGGGAAGATTGAAGATGGCACTCTTGCAGCAATCAAACGGTCAAACCCACAATCCAAGCAAGGCCTGACTGAATTTGAAACAGAAATTGAGAT GCTTTCAAAGTTAAGGCACAGGCATCTGGTCTCGTTGATTGGGTTCTGCGAAGAACAGAATGAGATGATCTTGGTTTATGAGTATATGGCAAATGGAACT CTTCGAAGTCATCTTTTTGGGAGTGATTTCCCACCATTGACATGGAAGCAGCGACTAGAAGCATGCATTGGTGCTGCCAGGGGACTCCATTACCTCCATA CTGGAGCAGATCGTGGAATAATTCACAGGGATATTAAGACAACCAACATACTGCTTGATGAAAATTTTGTAGCAAAAATGGCAGATTTTGGGTTGTCTAA AGCAGGTCCAGCTTTGGACCACACACATGTTAGTACAGCAGTGAAAGGAAGCTTTGGATATCTTGATCCTGAATACTATCGTCGACAGCAGTTGACTGAG AAATCTGATGTTTACTCATTTGGCGTGGTGTTGTTTGAAGTTGTTTGTTCTCGACCTGTTATAAACCCAAGCTTGCCAAAAGACCAGATCAACCTCGCAG AGTGGGCAATGAAGTGGCAGCGGCAGAAGTCACTGGAGACCATCGTTGACCCACGTCTCAGAGGAAATACTTGCCCTGAGTCATTGAAGAAGTTTGGAGA GATAGCAGAAAAATGCCTTGCTGATGAGGGGAAGAATCGTCCAACAATGGGGGAAGTTCTGTGGCATTTGGAATTTGTCTTGCAACTTCACGAAGCCTGG ATGCGCGCCAATGCCACCACTGAAACCTCCATTACTAGTAGTCAAGCATTGGAGGATTTGGAACTTAGAGTAGCAGAAGAGGCACGACGCCCCCCTCTCG CCTTGGAATAA
AA sequence Show only first row Show all	>Potri.011G164700.2 pacid=42781841 polypeptide=Potri.011G164700.2.p locus=Potri.011G164700 ID=Potri.011G164700.2.v4.1 annot-version=v4.1 MEKVQGRGIWGLVFLIMVFLSVSSREAQSKPVLVNCGANSSVNVDGRRWIGDLAPNDNFTVSSPGVAATDSNADGNSTLGPLYKTARIFNALNYTFAGMQ GNYFLRLHFCPFPFENYNVNESSFSVVANGLKLMTEFNVPVEISDKNLHLQNSNSNSSSLSLVKEYILTINDVLVVEFVSSRGSFGFINAIEVVPVVGTL FADSVSKVGGSNANFNVSGRGIETMYRLNIGGQEIKTNQDSDLWRKWEMDSSYMITADAGVEIRNTSNVTYASNNDSSVAPLLVYETARIMSNTEVLEKK FNMSWKFEVDPDFDYLIRLHFCELVYDKANQRIFRVYINNKTAADSFDVYVRAGGKNIAYHQDYFDTVSSKTNTLWVQLGPDTAVGASGTDALLNGLEIF KLSRSANLAYADRIDSTEKSGSHSKSWILWLGVGAGVASVLIIAITFTCIFCFGKNRRKQMSDAKDNPPGWRPLFMHGAVVSSIANNKGGVRSLNGSLAA STRVGRRFTLSEIRAATNNFDDSLVIGVGGFGKVYSGKIEDGTLAAIKRSNPQSKQGLTEFETEIEMLSKLRHRHLVSLIGFCEEQNEMILVYEYMANGT LRSHLFGSDFPPLTWKQRLEACIGAARGLHYLHTGADRGIIHRDIKTTNILLDENFVAKMADFGLSKAGPALDHTHVSTAVKGSFGYLDPEYYRRQQLTE KSDVYSFGVVLFEVVCSRPVINPSLPKDQINLAEWAMKWQRQKSLETIVDPRLRGNTCPESLKKFGEIAEKCLADEGKNRPTMGEVLWHLEFVLQLHEAW MRANATTETSITSSQALEDLELRVAEEARRPPLALE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30570		HERK2	hercules receptor kinase 2 (.1...		Potri.011G164700 [exp]	0	1
AT2G27310			F-box family protein (.1)		Potri.002G054500 [exp]	2.00	0.8038
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.004G084000 [exp]	6.48	0.8027
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Potri.018G132700 [exp]	7.48	0.7721
AT5G45470			Protein of unknown function (D...		Potri.015G107950 [exp]	9.27	0.7118
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Potri.007G023400 [exp]	10.19	0.7887
AT3G17640			Leucine-rich repeat (LRR) fami...		Potri.004G001000 [exp]	10.48	0.8077
AT5G51750		ATSBT1.3	subtilase 1.3 (.1)		Potri.015G133800 [exp]	10.95	0.7926
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Potri.005G070300 [exp]	13.74	0.7858
AT2G28410			unknown protein		Potri.009G013800 [exp]	16.49	0.7648
AT2G26110			Protein of unknown function (D...		Potri.018G053000 [exp]	16.79	0.7920

Compare expression of checked genes

Potri.011G164700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.