Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56040 1435 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G26540 1410 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G24240 969 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 926 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G34110 796 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 641 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 624 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 602 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G49670 530 / 3e-171 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 535 / 2e-170 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G467300 [exp] 1942 / 0 AT4G26540 1347 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.012G088100 [exp] 1084 / 0 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.015G080800 [exp] 1068 / 0 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.003G175700 [exp] 942 / 0 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 928 / 0 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G188700 [exp] 910 / 0 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G070900 [exp] 887 / 0 AT3G24240 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G198000 [exp] 772 / 0 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G063300 [exp] 749 / 0 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032954 [exp] 1471 / 0 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011756 [exp] 907 / 0 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10028612 [exp] 894 / 0 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10018911 [exp] 885 / 0 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10023677 [exp] 880 / 0 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10017782 [exp] 760 / 0 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000509 [exp] 756 / 0 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000814 [exp] 536 / 1e-173 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 535 / 6e-173 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10019248 [exp] 523 / 1e-168 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G164800.1 pacid=42781944 polypeptide=Potri.011G164800.1.p locus=Potri.011G164800 ID=Potri.011G164800.1.v4.1 annot-version=v4.1 ATGCCTGCTCCTCTAAGGAATCTCTTATTTTCTCCCAGTATCTTCTCCTTCACCTTACTTCTATCTATAAACTCTCTTTTCTTTCGTTCTTGTTACTCCA TTGATGAACAAGGCCAAGCCCTTTTAGCATGGAAGAACAGTTTAAACACCTCCACAGATGTACTCAATTCTTGGAACCCTTTAGACTCAAGTCCATGCAA ATGGTTTGGGGTCCATTGCAACTCAGATGGCAACATTATAGAGATAAACTTGAAAGCAGTAGATTTGCAAGGCCCCCTGCCTTCAAATTTTCAGCCTCTC AAATCCTTGAAGAGCCTTATCCTTTCATCAACCAATCTTACTGGTGCAATCCCGGAAGCGTTCGGAGATTATCTTGAGCTTACTCTCATTGATCTTAGTG ATAATTCTCTCTCAGGTGAAATCCCAGAGGAAATATGCAGACTAAGAAAGTTGGAAACTTTGTCTCTCAATACAAATTTTCTTGAAGGTGCCATTCCTTC TGATATTGGAAACCTTTCAAGTCTAGTGAATCTGACTCTCTTTGACAATCAACTCAGCGGCGAAATTCCACAGAGCATTGGAGCATTGAGAAGATTACAG ATTTTTCGAGCAGGTGGGAATAAAAATGTTAAGGGTGAGCTGCCTCAGGAGATTGGAAACTGCACCGAATTGGTTGTTTTAGGCCTCGCCGAAACCAGCA TTTCTGGGAGTCTTCCTTCATCAATTGGGATGCTGAAAAGGATTCAAACTATAGCCATTTACGCAACACTATTATCAGGTGCTATCCCAGAAGCGATTGG AGATTGCAGTGAGTTGCAGAACCTGTATCTATATCAGAATTCTATATCCGGTCCAATCCCAAGGCGAATTGGGGAACTCAGCAAGCTTCAGAGTCTGCTC TTGTGGCAGAACAGCATAGTTGGGGCAATCCCGGATGAGATTGGAAGTTGCACAGAGCTTACAGTCATTGATTTATCCGAGAATCTTCTAGCAGGAAGCA TACCAAGAAGCTTTGGAAACCTTTTGAAGCTTGAAGAGCTTCAGCTGAGTGTTAATCAGTTATCAGGTACCATACCTGTTGAAATCACAAACTGCACAGC TCTCACTCATCTTGAAGTAGACAACAATGGAATCTCCGGTGAGATTCCTGCTGGTATCGGCAACCTAAAGAGCTTGACTCTATTCTTTGCCTGGAAGAAC AATCTCACAGGAAATATCCCAGAGTCTCTTTCAGAGTGTGTCAATCTTCAGGCTCTTGATCTTTCATATAACAGTCTTTTTGGTTCAATACCAAAGCAGG TTTTCGGATTGCAAAATCTCACCAAGCTACTGATACTTTCCAATGAATTATCGGGCTTTATACCGCCTGATATAGGAAACTGCACCAACTTGTATAGGTT GAGGCTGAATGGCAACAGGTTAGGAGGTACTATTCCATCGGAGATCGAAAAGTTGAAGAGTTTGAATTTCATTGATTTGAGCAACAATCTTCTTGTTGGA AGAATCCCTTCATCAGTATCTGGATGTGAAAATCTTGAGTTTCTTGATCTCCATTCAAATGGGATCACTGGTTCTGTACCTGATACTCTGCCTAAAAGCC TACAGTATGTGGATGTTTCAGACAATAGGCTTACAGGTTCACTGGCTCATAGCATTGGGTCATTGATTGAATTAACCAAGCTTAATTTGGCGAAGAATCA ACTTACAGGAGGAATTCCAGCAGAGATATTGTCATGCAGTAAGCTACAATTGCTTAACCTTGGAGACAATGGTTTCTCTGGAGAAATTCCAAAGGAACTT GGTCAAATTCCATCACTGGAAATCTCTCTCAACCTAAGCTGCAACCAGTTTTCTGGCAAGATCCCATCGCAATTCTCTGATCTCAGCAAGTTGGGAGCAC TTGACATCTCTCACAACAAGCTTGAAGGAAGCTTGGATGTTCTTGCAAATCTCCAAAACCTCGTTTCCCTTAATGTCTCCTTCAATGACTTCTCTGGTGA ATTGCCTAACACCCCATTTTTTCGAAAGCTTCCGATAAGTGACCTTGCTTCGAATCAAGGACTCTACATTTCTGGAGGTGTAGCAACACCAGCAGACCAC TTGGGACCTGGAGCACACACTAGATCAGCAATGAGACTACTGATGTCTGTGCTTCTCAGTGCTGGTGTAGTACTGATACTACTAACAATCTACATGCTAG TTCGTGCTCGTGTTGATAATCATGGGCTGATGAAAGATGATACATGGGAAATGAATTTGTATCAGAAGCTTGAATTCTCCGTCAACGACATTGTTAAAAA TCTAACATCATCTAATGTCATAGGCACTGGCAGCTCTGGAGTTGTGTACAGGGTGACCCTTCCAAATTGGGAGATGATAGCTGTAAAGAAGATGTGGTCA CCAGAAGAGTCTGGAGCATTCAATTCTGAAATTCGGACACTCGGTTCAATCAGACACCGAAATATTGTCCGGCTTCTAGGCTGGTGTTCAAACAAGAATT TGAAATTGCTTTTCTATGATTACCTCCCAAATGGAAGCTTGAGCTCCCTCCTTCATGGTGCTGGCAAGGGAGGAGCAGAGTGGGAAGCTAGATATGATGT TTTGTTAGGTGTGGCACACGCACTTGCATACCTGCACCATGATTGTGTGCCACCTATTCTACATGGGGATGTTAAAGCCATGAATGTGCTTTTAGGACCA GGCTACGAACCTTACCTAGCTGACTTTGGCCTAGCAAGAGTGGTAAATAACAAATCTGATGATGATTTATGCAAGCCAAGTCCAAGACCTCAACTTGCTG GTTCTTATGGATATATGGCTCCAGAGCATGCATCGATGCAGCGTATTACCGAGAAAAGTGATGTGTACAGTTTTGGGGTGGTGCTTTTAGAGGTTTTAAC AGGAAGGCATCCATTAGACCCAACTTTGCCTGATGGTGCACACTTAGTTCAATGGGTTAGGGAACACTTAGCAAGCAAGAAAGATCCAGTTGACATCCTT GATTCAAAGCTTAGAGGAAGAGCTGACCCTACAATGCACGAAATGCTCCAAACATTAGCAGTTTCATTCCTGTGCATCAGTACTCGAGCTGATGATCGTC CAATGATGAAGGACGTTGTTGCAATGCTGAAGGAGATTAGGCACGTTGAGACCGTAAGGCCAGAACCTGACCTGTCAAAGGGGGTTAATTTGACAGCAGT TCGCTCATCACCTCCTGCTAAGATTGTAGTTTCACAAGGATCTTCTAATTGTTCCTTTGCCTTCTCAGATTATTCAATCTAA
AA sequence Show only first row Show all	>Potri.011G164800.1 pacid=42781944 polypeptide=Potri.011G164800.1.p locus=Potri.011G164800 ID=Potri.011G164800.1.v4.1 annot-version=v4.1 MPAPLRNLLFSPSIFSFTLLLSINSLFFRSCYSIDEQGQALLAWKNSLNTSTDVLNSWNPLDSSPCKWFGVHCNSDGNIIEINLKAVDLQGPLPSNFQPL KSLKSLILSSTNLTGAIPEAFGDYLELTLIDLSDNSLSGEIPEEICRLRKLETLSLNTNFLEGAIPSDIGNLSSLVNLTLFDNQLSGEIPQSIGALRRLQ IFRAGGNKNVKGELPQEIGNCTELVVLGLAETSISGSLPSSIGMLKRIQTIAIYATLLSGAIPEAIGDCSELQNLYLYQNSISGPIPRRIGELSKLQSLL LWQNSIVGAIPDEIGSCTELTVIDLSENLLAGSIPRSFGNLLKLEELQLSVNQLSGTIPVEITNCTALTHLEVDNNGISGEIPAGIGNLKSLTLFFAWKN NLTGNIPESLSECVNLQALDLSYNSLFGSIPKQVFGLQNLTKLLILSNELSGFIPPDIGNCTNLYRLRLNGNRLGGTIPSEIEKLKSLNFIDLSNNLLVG RIPSSVSGCENLEFLDLHSNGITGSVPDTLPKSLQYVDVSDNRLTGSLAHSIGSLIELTKLNLAKNQLTGGIPAEILSCSKLQLLNLGDNGFSGEIPKEL GQIPSLEISLNLSCNQFSGKIPSQFSDLSKLGALDISHNKLEGSLDVLANLQNLVSLNVSFNDFSGELPNTPFFRKLPISDLASNQGLYISGGVATPADH LGPGAHTRSAMRLLMSVLLSAGVVLILLTIYMLVRARVDNHGLMKDDTWEMNLYQKLEFSVNDIVKNLTSSNVIGTGSSGVVYRVTLPNWEMIAVKKMWS PEESGAFNSEIRTLGSIRHRNIVRLLGWCSNKNLKLLFYDYLPNGSLSSLLHGAGKGGAEWEARYDVLLGVAHALAYLHHDCVPPILHGDVKAMNVLLGP GYEPYLADFGLARVVNNKSDDDLCKPSPRPQLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTLPDGAHLVQWVREHLASKKDPVDIL DSKLRGRADPTMHEMLQTLAVSFLCISTRADDRPMMKDVVAMLKEIRHVETVRPEPDLSKGVNLTAVRSSPPAKIVVSQGSSNCSFAFSDYSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56040			Leucine-rich receptor-like pro...		Potri.011G164800 [exp]	0	1
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.006G206500 [exp]	1.41	0.9409	CTS2.11
AT5G15780			Pollen Ole e 1 allergen and ex...		Potri.004G114300 [exp]	3.00	0.9033
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.006G097800 [exp]	4.24	0.9083
AT4G26540			Leucine-rich repeat receptor-l...		Potri.001G467300 [exp]	4.35	0.8621
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Potri.014G165700 [exp]	5.09	0.8505
AT4G30400			RING/U-box superfamily protein...		Potri.018G098500 [exp]	8.48	0.8935
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.016G072900 [exp]	13.03	0.8960
AT3G02500			unknown protein		Potri.017G112600 [exp]	16.73	0.8966
AT1G74160			unknown protein		Potri.017G095000 [exp]	19.67	0.8841
					Potri.016G139350 [exp]	21.23	0.8805

Compare expression of checked genes

Potri.011G164800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.