Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44730 1300 / 0 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT2G47500 755 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G09170 627 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G63640 562 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT5G27000 558 / 0 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G73860 545 / 2e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 540 / 6e-173 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G41310 525 / 3e-169 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G10310 451 / 7e-142 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT2G22610 345 / 2e-101 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G467600 [exp] 1923 / 0 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.005G021100 [exp] 771 / 0 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.013G011500 [exp] 763 / 0 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.014G125700 [exp] 754 / 0 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.002G201000 [exp] 746 / 0 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G104000 [exp] 597 / 0 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 578 / 0 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.012G056700 [exp] 551 / 2e-178 AT1G63640 857 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 546 / 2e-176 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032897 [exp] 1538 / 0 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10001306 [exp] 1404 / 0 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10009851 [exp] 713 / 0 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10015212 [exp] 682 / 0 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10029865 [exp] 561 / 0 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10032264 [exp] 537 / 9e-172 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10024628 [exp] 533 / 9e-170 AT1G63640 980 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10002007 [exp] 526 / 4e-168 AT1G63640 941 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10018049 [exp] 508 / 2e-162 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10042045 [exp] 499 / 3e-159 AT3G10310 863 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0188 [poplar] [flax] CH PF00307 [poplar] [flax] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Potri.011G165200.2 pacid=42781695 polypeptide=Potri.011G165200.2.p locus=Potri.011G165200 ID=Potri.011G165200.2.v4.1 annot-version=v4.1 ATGCCACACGAAACCAACCATGGCTCCCTTTTCACCTCTCCTTGCAAGAACTTGAGAGGGTTAAGAGGTTTGATTCCCAGCAATGAGGCTTGTTACCCTG ATGAGATTATCAATGACCGCGAATTAGCTCAAAGAAAAGCTGAAGAAGCAGCTTCAAGGAGGTACCAAGCAGCAGATTGGCTGAGGCAGATGGACAAGGG GGCATCAAGAACCCTGCCCAAAGAACCCTCAGAGGAAGAGTTTTGCCTTGCTCTAAGAAATGGCCTCATTCTCTGCAATGTCCTCAATAAAGTCAACCCT GGTGCTGTTCTCAAGGTGGTTCCGAATCTCACAGTGCAGTCTACGGAAGGAGCAGCACAGTCTGCGATTCAGTACTTTGAGAACATGAGGAATTTTTTGG TGGCTGTTAAAGATATGAAGCTTTTGACTTTTGAAGCATCTGACTTGGAGAAGGGAGGCTCGTCGAGTAAGGTTGTAGATTGCATTCTCTGTTTGAAAGG ATATTATGAATGGAAGCAGGCTGGTGGAATTGGTGTATGGAGATATGGAGGGCTTATTAAGATCGAATCATTCCAGAAGGGATCGCCATCTTCTCTGGTC GGCAGCGAAAGTGCTGATGAGTCTGTTGATGAATCTGAATCATCACAATATGAACAAGTATTAGAGTTTCTTCATCTTTCCAGTGAGGTCTCAATTGAAG AAACCAAAACTGCCAATGCTCTGGCCTTTCTTTTCGATCATTTTGGACTCAGACTTCTACAAGCTTACCTTCAGGAGATCAATGGGATTGAAGAGCTGCC TTTGAATGGAATGGTAATAGATACTTTGCTCAGAAAGGCAGTTAAAGATTTCTCAGCATTGCTTGTTTCTCAGGGCACACAGCTTGGACTATTTCTGAAG AAAATATTGAAGGGTGATATCGGTTCCCTATCAAAAAATGAATTCATAGAAGCCATTTCCCAATATCTTAGACAAAGAGCTAGTTTGGCTTCAAGTGATT TCTCCAAGTTTTGCATCTGTGGTGGCAAAAGAGAAACTATTCAGCATACTGTTAGTAGCTCTTCCGGTCACACGGAAGTAATTGATCTTCATCAGAAACA GCTTGAGGATCTGAGATTTTATTACAAAGAAATGAGGCGACAAGTGAAACAAATTCAAGCAGATTGGGAAGAAGAAGTCAGCAGGCTTGAACAACATATC AGGGATCTTGAAGTAGCATCATCTTCTTGTCACCAAGTTTTAGAGGAAAATCGCCAGCTTTACAATCAAGTACAAGACCTTAAAGGAACAATCAGGGTCT ATTGTAGAGTCAGACCCTTCTTGCGAGGGCAATCGAATGGGCAATCTACTGTGGACTACATTGGAGAAAATGGAAATATCATGATTGTTAATCCTCTTAA GAATGGGAAAGAAGCAAGAAAGGTGTTTTCCTTCAACAAAGTATTTGGAACGAATGTTACTCAAGAACAAATATATGCGGACACTCAACCATTGGTCCGG TCAGTTCTAGATGGCTATAATGTTTGCATCTTTGCATATGGACAAACCGGATCAGGGAAGACATATACAATGAGTGGCCCTGATTTGACTTCTGAACAAA CATGGGGTGTGAACTATCGAGCTCTGCGCGACTTATTTCAGATTTCAACGACAAGGGGAGATGTCATTAGGTATGAAGTTGGAGTTCAAATGGTAGAAAT ATATAATGAACAAGTGAGAGACCTGTTAGTCAGTGATGGCTCCAACAGAAGATTAGACATCCGTAACAATTCCCAGTTGAATGGGCTTAATGTACCTGAC GCAAGCTGGATTCCAGTTTCAAGTACACAAGATGTTCTTGATCTAATGAAAATCGGTCAAAGAAATCGTGCTGTCGGTGCAACTGCTTTAAACGAGCGAA GCAGTCGATCTCATAGTGTTTTGACAGTTCATGTCTATGGAAAAGAATTAGTTTCTGGATCAATTCTTAAAGGCTGCTTACACATGGTGGATTTAGCTGG AAGTGAAAGAGTGGATAAATCAGAAGCTGTTGGTGAGAGATTGAAAGAAGCTCAACATATTAATCGATCTCTCTCCGCTTTGGGAGATGTCATCTCTGCT CTTGCACAGAAGAGTCCACATGTTCCCTATAGAAACAGCAAGCTTACACAAGTTCTGCAGGATTCTTTAGGTGGGCATGCTAAAACACTAATGTTTGTAC ATATAAATCCTGAACTTAATTCTATTGGGGAGACAATTAGCACACTGAAGTTTGCTGAGAGAGTTGCATCTGTTGAACTTGGGGCAGCTAGATCGAACAA AGAAACTGGCGAAATCCGAGAGCTGAAAGAAGAGATATCAAACCTCAAAGAGGCATTGGAGAGGAAGGAAGCTGAAATCGAGCAAATCAAAGGTGGCAGT ACTAGAAGCACAGCAGAATCTCAAAGAACAAGAGCAGTTTCTCCTTTCTATGTGCCAAGATATGGTGCAAGTGCCAACTTAAAATCTGAGACATCTCACA GGCCAATTGATGACTCTAGAAGCTCAGAGGCTAGAAGTTGTTCTTCGGGTAAGCAAAGGAGATCAAGTTTTCCTTCTTCACTCACAGACAAGGAAACATT ACCAAGGATTCCTTTCCTAGGCGAAGAGAGGTTAGCAAGCTCCACAAAACCAAGATCACCATCCCCTCCTGTTAGGAGATCAACCTCAACAGATAGAGGA GCCCTCAGTAGAAGCAGGGTCAAGGAGAGAGTTGAGAATCAACCAGTTGCAAGAGTACCCTTTCCAGCTATAGTGCCTGTCAACAAATCCATAGCTGCAA TTCCAGTGATCCCATCAGCAGATAACAGCTCAAAAGGTCCATATATAGGCTCACAAGAAGCGCTGAAGCAGGATAACATCTCCAAAGCATTCTATAACCT CCAAAAGGTTAGCACCAGGAAATATTACCCGGAACACGAAGAGGAGCAGTGTAGGCAAGCTCTTAATATAAGACAAGGAGGCATTAAAAAAAGCAAAAAT GAAAGCAAAGTTAAGGCGAAGAATCAAATGCCAGCAAAGTTCCACGAGGTTGATGTTGGGACAACAATGCTCTCTGACATAGATGCCGGTGAAAAGATAG AGGAGCCGCGAAAGAGTGACTCTTCTGAGCCAGAAAACGAGCGTTTGCTTCCCGTGTCTCCAACAATAGGTGCTTTAATGGTGAAGAAGCTTCAGATGAA TTTCTCGAAGAACTCACAGAATCTTGAGCCAAGAGTTGTTCAAGTTGTGGAACCCTTATTGGCTGGCAAACTTGAAAACAAACTTCCAAACAACGTAACT CGTAATGCGAAAGAAGCCGGAAACACATCCATGCCTGAATTCAGAAGGAGTCGATCTACTCCTCGTGGAAAGTTTACGATCTTACCTTGA
AA sequence Show only first row Show all	>Potri.011G165200.2 pacid=42781695 polypeptide=Potri.011G165200.2.p locus=Potri.011G165200 ID=Potri.011G165200.2.v4.1 annot-version=v4.1 MPHETNHGSLFTSPCKNLRGLRGLIPSNEACYPDEIINDRELAQRKAEEAASRRYQAADWLRQMDKGASRTLPKEPSEEEFCLALRNGLILCNVLNKVNP GAVLKVVPNLTVQSTEGAAQSAIQYFENMRNFLVAVKDMKLLTFEASDLEKGGSSSKVVDCILCLKGYYEWKQAGGIGVWRYGGLIKIESFQKGSPSSLV GSESADESVDESESSQYEQVLEFLHLSSEVSIEETKTANALAFLFDHFGLRLLQAYLQEINGIEELPLNGMVIDTLLRKAVKDFSALLVSQGTQLGLFLK KILKGDIGSLSKNEFIEAISQYLRQRASLASSDFSKFCICGGKRETIQHTVSSSSGHTEVIDLHQKQLEDLRFYYKEMRRQVKQIQADWEEEVSRLEQHI RDLEVASSSCHQVLEENRQLYNQVQDLKGTIRVYCRVRPFLRGQSNGQSTVDYIGENGNIMIVNPLKNGKEARKVFSFNKVFGTNVTQEQIYADTQPLVR SVLDGYNVCIFAYGQTGSGKTYTMSGPDLTSEQTWGVNYRALRDLFQISTTRGDVIRYEVGVQMVEIYNEQVRDLLVSDGSNRRLDIRNNSQLNGLNVPD ASWIPVSSTQDVLDLMKIGQRNRAVGATALNERSSRSHSVLTVHVYGKELVSGSILKGCLHMVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISA LAQKSPHVPYRNSKLTQVLQDSLGGHAKTLMFVHINPELNSIGETISTLKFAERVASVELGAARSNKETGEIRELKEEISNLKEALERKEAEIEQIKGGS TRSTAESQRTRAVSPFYVPRYGASANLKSETSHRPIDDSRSSEARSCSSGKQRRSSFPSSLTDKETLPRIPFLGEERLASSTKPRSPSPPVRRSTSTDRG ALSRSRVKERVENQPVARVPFPAIVPVNKSIAAIPVIPSADNSSKGPYIGSQEALKQDNISKAFYNLQKVSTRKYYPEHEEEQCRQALNIRQGGIKKSKN ESKVKAKNQMPAKFHEVDVGTTMLSDIDAGEKIEEPRKSDSSEPENERLLPVSPTIGALMVKKLQMNFSKNSQNLEPRVVQVVEPLLAGKLENKLPNNVT RNAKEAGNTSMPEFRRSRSTPRGKFTILP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Potri.011G165200 [exp]	0	1
AT5G01030			Protein of unknown function (D...		Potri.006G093600 [exp]	1.73	0.7650
AT1G76630			Tetratricopeptide repeat (TPR)...		Potri.002G001700 [exp]	5.74	0.7428
AT3G62110			Pectin lyase-like superfamily ...		Potri.002G186900 [exp]	6.48	0.7917
AT4G38670			Pathogenesis-related thaumatin...		Potri.009G132200 [exp]	6.78	0.7662
AT3G08840			D-alanine--D-alanine ligase fa...		Potri.006G106000 [exp]	6.92	0.7420
AT2G41370		BOP2	BLADE ON PETIOLE2, Ankyrin rep...		Potri.016G040500 [exp]	8.00	0.7268
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.010G136900 [exp]	12.80	0.7034
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Potri.012G054200 [exp]	13.07	0.6848
AT3G50780			unknown protein		Potri.007G032800 [exp]	16.30	0.7489
AT2G34700			Pollen Ole e 1 allergen and ex...		Potri.011G053600 [exp]	16.73	0.7541

Compare expression of checked genes

Potri.011G165200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.