Plant FIBer expression Database

Potri.011G165300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.011G165300.1 pacid=42781479 polypeptide=Potri.011G165300.1.p locus=Potri.011G165300 ID=Potri.011G165300.1.v4.1 annot-version=v4.1
ATGTATGTGCTCATGAGATGCTGTGAAACCCACACCCTTCCTCCTCGCGCACACATATTTGGTGCCCTAGCTAGTGAAGGTACGTGTGTGTGTGTGTCAA
TGGAAGCCACCGCTGTTGCTCTCTGGGTTGAAAGAATTGCTTTCCTTTTGTTATCGTGCTTTACCAGCATCGAAAGTTGTGGCTTTGGCTGGGGGGCCGT
GCTTGGTCTCTTGGCACTGTCTAACTTCCTGTTTAGGTGTGCCATGGAAGAAAAGGCTTCTGCAGTAAAGTTGAAGAAGCTCCACAAAAATCTCAAGAAC
TCTGACTCGAGGATCAATATCGAGCGATATTCTGATGTCAAGAGCAACACCAACGAAGAAAAGAAAGCAGTTGATGAGGATGGAGTGATGAACAACAGAT
CAGCTACCTCTGGTGAAGGAGGAGAGGACTTGACCATGAAGTCCAAACTCTTTGAAATATTGAAGAAAGCTACAAATAATTGTGATGCAGAAAAGCTTTC
ATACAAATGGCAGGAAATGGTGGTGAACAAAGTGGAGGATGAATTCAAGAAATACCGAGCCCTCGGTGATGAAGAACTGAGGAAAGCAAAAGGAGGATGC
GAGGAAGAATTCAAGAAGAAGCTGAAAATCAAGGAGGACGAATTGGAAGCCAAGCATGACGAGGAGAGACGCAAATGGGAGAAAGAGAGGAAAATCTTGA
AAGAAAAATATGAAATGATGCGATGGACATAG
AA sequence
>Potri.011G165300.1 pacid=42781479 polypeptide=Potri.011G165300.1.p locus=Potri.011G165300 ID=Potri.011G165300.1.v4.1 annot-version=v4.1
MYVLMRCCETHTLPPRAHIFGALASEGTCVCVSMEATAVALWVERIAFLLLSCFTSIESCGFGWGAVLGLLALSNFLFRCAMEEKASAVKLKKLHKNLKN
SDSRINIERYSDVKSNTNEEKKAVDEDGVMNNRSATSGEGGEDLTMKSKLFEILKKATNNCDAEKLSYKWQEMVVNKVEDEFKKYRALGDEELRKAKGGC
EEEFKKKLKIKEDELEAKHDEERRKWEKERKILKEKYEMMRWT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.011G165300
[exp]
0 1
AT4G16790 hydroxyproline-rich glycoprote... Potri.003G079900
[exp]
1.41 0.9264
AT5G04980 DNAse I-like superfamily prote... Potri.008G011000
[exp]
2.00 0.9193
AT3G55370 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) Potri.008G055100
[exp]
3.46 0.9043
AT1G10380 Putative membrane lipoprotein ... Potri.010G040500
[exp]
4.47 0.8969
AT1G10380 Putative membrane lipoprotein ... Potri.007G094800
[exp]
5.29 0.9040
AT2G03500 GARP Homeodomain-like superfamily p... Potri.006G155200
[exp]
6.92 0.8561
AT5G60200 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) Potri.005G134200
[exp]
7.00 0.8836
AT2G19480 NFA2, NFA02, NA... NUCLEOSOME/CHROMATIN ASSEMBLY ... Potri.003G040700
[exp]
9.38 0.8827
AT5G64530 NAC ANAC104, XND1 Arabidopsis NAC domain contain... Potri.007G105000
[exp]
11.22 0.8548
AT1G79430 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPM... Potri.010G174100
[exp]
11.61 0.8784

Potri.011G165300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.