Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26500 405 / 7e-141 SUFE1, EMB1374, CPSUFE, ATSUFE SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) AT1G55805 138 / 2e-39 BolA-like family protein (.1) AT1G67810 80 / 6e-17 SUFE2 sulfur E2 (.1) AT5G50210 77 / 4e-15 SUFE3, OLD5, QS SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) AT5G09830 51 / 3e-08 BolA-like family protein (.1) AT5G17560 49 / 7e-07 BolA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G468300 [exp] 633 / 0 AT4G26500 392 / 5e-136 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Potri.012G036800 [exp] 116 / 7e-32 AT1G55805 130 / 6e-40 BolA-like family protein (.1) Potri.015G085300 [exp] 93 / 3e-20 AT5G50210 989 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Potri.012G089500 [exp] 87 / 1e-18 AT5G50210 401 / 1e-134 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Potri.013G074100 [exp] 45 / 2e-05 AT5G17560 156 / 6e-49 BolA-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015605 [exp] 444 / 8e-156 AT4G26500 387 / 2e-133 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10032905 [exp] 438 / 1e-153 AT4G26500 380 / 4e-131 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10026101 [exp] 114 / 5e-31 AT4G26500 124 / 1e-37 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10002318 [exp] 109 / 2e-29 AT1G55805 119 / 2e-35 BolA-like family protein (.1) Lus10006468 [exp] 75 / 3e-15 AT1G67810 189 / 1e-59 sulfur E2 (.1) Lus10043314 [exp] 77 / 4e-15 AT5G50210 1020 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Lus10019464 [exp] 75 / 2e-14 AT5G50210 1016 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Lus10011408 [exp] 64 / 2e-11 AT1G67810 167 / 3e-51 sulfur E2 (.1) Lus10020347 [exp] 50 / 3e-07 AT5G17560 158 / 2e-49 BolA-like family protein (.1) Lus10009527 [exp] 50 / 3e-07 AT5G17560 145 / 2e-44 BolA-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01722 [poplar] [flax] BolA BolA-like protein CL0233 [poplar] [flax] SufE_NifU PF02657 [poplar] [flax] SufE Fe-S metabolism associated domain
Representative CDS sequence Show only first row Show all	>Potri.011G165400.1 pacid=42781403 polypeptide=Potri.011G165400.1.p locus=Potri.011G165400 ID=Potri.011G165400.1.v4.1 annot-version=v4.1 ATGTCTTCCACTTCTCTTCGCATATTGACCACAAAAATCCCAAATTCTCTTCACTCCACCAAAACCTTAGCCTCCTCCTTAAAACCCACGAATCTTTCCT TCTTTATCTTCTCAAAACCTGTTTCTTTCCAAAAAATTCCTACAAAGACTCAACCTTTACTTGCTTCTTCATCATCAAGTTCTATGTCTTTGCAACCCAT TGAAGAACTACCTCCAAAGCTTCAAGAAATGATCAAGCTCTTTCAGTCAGTTCAAGAACCGAAAGCTAAGTATGAGCAGTTGCTTTTTTATGGCAAGAAT TTGAAACCACTTGATAGTGAGTTTAAAACTAGGGAGAATAAGGTTGAAGGCTGTGTTTCTCAAGTTTGGGTTAGGGCTTATTTGGATTTGGAGAAGAATG TTGTGTTTGAAGCTGATTCTGATTCGGTTTTAACTAAGGGTCTTGCTGCTTTGCTTGTTCAAGGGCTTTCGGGCCGGCCAGTTAAGGAAGTTTTGAGGGT TTCTCCTGATTTTGCTGTTCTTCTTGGGTTGCAGCAGAGTTTGACACCGTCTAGGAATAATGGTTTTTTGAATATGTTGAAGTTGATGCAGAAGAAAGCA CTTGAATTGTATTTGGAGGCTGAAAAGGGAAGCGGGGTTGTTGAAAGTTCGAAGCTTGGTGGTGGTAATGGTGATAATGAGGGAAAGGTTGAAGATTTGG GATCAAATGGTGATGTTGGTGTTGAAACTTCTGGTGACAATTTTGTTAAGGGCTTGAGTTTTGATGGGAAAACTGATGGTGGTGAGACTTCGGGATTGGA GGGAAGTGAAAAGGGGTCGAATTCAGAGGGATTAGGGAGTAGGGGATTAAGGATCAGGGAGAAATTAGAGAAGGAGCTAAGTCCTGTTGAATTGGAGGTG GATGATATTTCATATCAGCATGCTGGGCATGCTGGTGTGAGAGGGAGTGATGGAGAGACGCATTTTAATGTGAAAGTTGTGTCAAAGGAGTTTGGAGGGA AGAGCTTGGTGAAGAGGCATAGGCTGATTTATAATTTGTTGCAAGAGGAGTTGGAGAGTGGATTACATGCATTGTCTATTGTAGCGAAGACGCCGGATGA AGTTGGTGAGAGGTGA
AA sequence Show only first row Show all	>Potri.011G165400.1 pacid=42781403 polypeptide=Potri.011G165400.1.p locus=Potri.011G165400 ID=Potri.011G165400.1.v4.1 annot-version=v4.1 MSSTSLRILTTKIPNSLHSTKTLASSLKPTNLSFFIFSKPVSFQKIPTKTQPLLASSSSSSMSLQPIEELPPKLQEMIKLFQSVQEPKAKYEQLLFYGKN LKPLDSEFKTRENKVEGCVSQVWVRAYLDLEKNVVFEADSDSVLTKGLAALLVQGLSGRPVKEVLRVSPDFAVLLGLQQSLTPSRNNGFLNMLKLMQKKA LELYLEAEKGSGVVESSKLGGGNGDNEGKVEDLGSNGDVGVETSGDNFVKGLSFDGKTDGGETSGLEGSEKGSNSEGLGSRGLRIREKLEKELSPVELEV DDISYQHAGHAGVRGSDGETHFNVKVVSKEFGGKSLVKRHRLIYNLLQEELESGLHALSIVAKTPDEVGER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Potri.011G165400 [exp]	0	1
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Potri.013G067900 [exp]	1.41	0.9604
AT2G29950		ELF4-L1	ELF4-like 1 (.1)		Potri.001G251600 [exp]	1.73	0.9202
AT3G23710		AtTic22-III	translocon at the inner envelo...		Potri.002G236000 [exp]	2.44	0.9327
AT2G38730			Cyclophilin-like peptidyl-prol...		Potri.001G030000 [exp]	4.24	0.8927
AT4G14000			Putative methyltransferase fam...		Potri.001G321100 [exp]	4.47	0.9130
AT1G78930			Mitochondrial transcription te...		Potri.007G001800 [exp]	9.16	0.9145
AT1G53460			unknown protein		Potri.001G376900 [exp]	10.58	0.8837
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Potri.004G002900 [exp]	13.03	0.8820
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Potri.010G173400 [exp]	13.19	0.9056
AT1G31335			unknown protein		Potri.006G127000 [exp]	14.07	0.8712

Compare expression of checked genes

Potri.011G165400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.