Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26490 276 / 2e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G56050 253 / 4e-84 unknown protein AT3G26350 164 / 9e-49 unknown protein AT1G13050 146 / 3e-42 unknown protein AT5G56070 58 / 9e-11 unknown protein AT3G11650 59 / 2e-10 NHL2 NDR1/HIN1-like 2 (.1) AT5G06320 57 / 1e-09 NHL3 NDR1/HIN1-like 3 (.1) AT2G35980 56 / 2e-09 NHL10, YLS9, ATNHL10 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22870 54 / 8e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 51 / 1e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G468400 [exp] 455 / 1e-164 AT4G26490 265 / 5e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.010G049000 [exp] 191 / 1e-58 AT3G26350 189 / 1e-56 unknown protein Potri.003G046000 [exp] 83 / 4e-19 AT5G45320 164 / 3e-51 unknown protein Potri.004G234500 [exp] 69 / 4e-14 AT5G45320 173 / 7e-55 unknown protein Potri.008G184500 [exp] 62 / 2e-11 AT1G13050 53 / 3e-08 unknown protein Potri.009G003800 [exp] 61 / 3e-11 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G019600 [exp] 60 / 1e-10 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G039400 [exp] 57 / 2e-09 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G200700 [exp] 50 / 3e-07 AT1G17620 168 / 2e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032906 [exp] 286 / 1e-97 AT4G26490 218 / 1e-70 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015606 [exp] 282 / 7e-96 AT4G26490 221 / 1e-71 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006464 [exp] 168 / 2e-49 AT3G26350 208 / 2e-63 unknown protein Lus10011406 [exp] 174 / 3e-49 AT3G26350 209 / 5e-60 unknown protein Lus10037259 [exp] 81 / 2e-18 AT5G45320 182 / 2e-58 unknown protein Lus10016161 [exp] 68 / 2e-13 AT5G22870 148 / 8e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021404 [exp] 68 / 2e-13 AT5G22870 151 / 6e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021287 [exp] 59 / 3e-10 AT2G35980 236 / 7e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034173 [exp] 56 / 6e-09 AT2G27260 149 / 2e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016962 [exp] 55 / 8e-09 AT2G35980 237 / 3e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.011G165500.1 pacid=42782275 polypeptide=Potri.011G165500.1.p locus=Potri.011G165500 ID=Potri.011G165500.1.v4.1 annot-version=v4.1 ATGCTTTCACTCCCTCCTCCACCACCCTCACTGCTGCCCACAGAAGCAGCTCCACCACAAGAAAAGCGAAGCTTTCCAGTCTCTCTCAATCAGATTGTTA TATCAAAGCAAGCCAGAAATCCACAAAGTTCTTCAGCAGAGACATCAAATTCAGACAGCAAGAAATTAAGCAAGCCACCAATATTCAAACATCCTCGACC TCGCCGTACCAATCCAGTTATATGGTGCGGCGCAATCCTATGCCTCATATTCAGCCTTGTTCTGATCATCTTTGGAATAGCAACTTTGATCATCTACCTA GTCATTAAGCCAAGAAACCCAGTGTTTGACTTACCCAACGCAAATCTAAATAGCGTATACTTCGATTCACCAGAGTATTTCAATGGGGATCTTACCTTCC TTGCAAACTTCTCCAACCCAAATCGGAAAATTGATGTAAGATTTGAGTATGTGGATATAGAGCTCTACTTTTCTGACAGACTTATAGGAACCCAAGCTCT TCAGCCTTTCACACAAAGAAGTAGGGAAACAAGATTGGAATCAGTTCATATCATATCAAGCTTGGTCTATTTGCCCCAGAATCTTGCTGTGGAACTTCAA AGGCAGGTGCAGAGTAACAAGGTAAACTACAACATAAGAGGAACTTTTAAAGTGAGAGCAAACATGGGTCTGCTCCATTATTCATACTGGTTACATGGAA GGTGTGAGATAGAGATGACCGGCCCACCCACTGGTGTTATTGTTGCCCGAAGTTGCAGAACAAAGAGATGA
AA sequence Show only first row Show all	>Potri.011G165500.1 pacid=42782275 polypeptide=Potri.011G165500.1.p locus=Potri.011G165500 ID=Potri.011G165500.1.v4.1 annot-version=v4.1 MLSLPPPPPSLLPTEAAPPQEKRSFPVSLNQIVISKQARNPQSSSAETSNSDSKKLSKPPIFKHPRPRRTNPVIWCGAILCLIFSLVLIIFGIATLIIYL VIKPRNPVFDLPNANLNSVYFDSPEYFNGDLTFLANFSNPNRKIDVRFEYVDIELYFSDRLIGTQALQPFTQRSRETRLESVHIISSLVYLPQNLAVELQ RQVQSNKVNYNIRGTFKVRANMGLLHYSYWLHGRCEIEMTGPPTGVIVARSCRTKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26490			Late embryogenesis abundant (L...		Potri.011G165500 [exp]	0	1
AT1G72010	TCP	TCP22	TCP family transcription facto...		Potri.019G081800 [exp]	1.00	0.8389
AT2G23790			Protein of unknown function (D...		Potri.002G133400 [exp]	2.44	0.8190
AT5G18260			RING/U-box superfamily protein...		Potri.019G032300 [exp]	3.87	0.8176
AT2G33845			Nucleic acid-binding, OB-fold-...		Potri.011G114800 [exp]	4.89	0.7970
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.007G082400 [exp]	5.65	0.8184
AT4G03415			Protein phosphatase 2C family ...		Potri.019G103100 [exp]	6.48	0.8168
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Potri.012G083500 [exp]	6.78	0.7801
AT5G51350		MORE LATERAL GR...	MORE LATERAL GROWTH1, Leucine-...		Potri.018G113000 [exp]	7.21	0.8194
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.010G223766 [exp]	7.74	0.7911
AT1G12210		RFL1	RPS5-like 1 (.1)		Potri.001G443932 [exp]	10.58	0.8163

Compare expression of checked genes

Potri.011G165500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.