Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51550 657 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G39000 529 / 9e-176 Malectin/receptor-like protein kinase family protein (.1) AT5G28680 519 / 5e-172 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G04690 514 / 3e-170 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G38990 482 / 1e-157 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 472 / 5e-154 THE1 THESEUS1, protein kinase family protein (.1) AT1G30570 460 / 2e-149 HERK2 hercules receptor kinase 2 (.1) AT5G59700 452 / 9e-147 Protein kinase superfamily protein (.1) AT3G46290 450 / 8e-146 HERK1 hercules receptor kinase 1 (.1) AT2G21480 437 / 2e-140 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G140000 [exp] 1238 / 0 AT3G51550 696 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.016G138700 [exp] 643 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 638 / 0 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G095900 [exp] 610 / 0 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096600 [exp] 602 / 0 AT3G51550 829 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096000 [exp] 602 / 0 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 598 / 0 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.008G105500 [exp] 569 / 0 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 558 / 0 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014185 [exp] 612 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 541 / 1e-180 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10016907 [exp] 518 / 2e-171 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10032976 [exp] 504 / 8e-166 AT3G51550 682 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10028140 [exp] 459 / 4e-149 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 457 / 2e-148 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10037887 [exp] 446 / 1e-143 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10017478 [exp] 441 / 1e-141 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10028805 [exp] 439 / 7e-141 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10027509 [exp] 428 / 2e-137 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.011G165800.1 pacid=42782174 polypeptide=Potri.011G165800.1.p locus=Potri.011G165800 ID=Potri.011G165800.1.v4.1 annot-version=v4.1 ATGAAGACCGCAAGCCCAAATGGAAACTCATTGCTTGCTCCCGTCATGTTTCTTCCTTTCTTCTTCATTGCCTGTTGCACAGTCCCCTCCTCTGCTGATA AGCCATCATATTACATGCCCCTTGACAGCTTTGCAGTGGATTGTTCTCCATCAGTTTCACCACTTGATGCTGGATTCCCTAATGATAAAAAAAATGAAAT TGATTTTTCATCAGTTTCAAAAGTATACGCCGTAGATCCTAGCAGCAGCGAAAAACCGAGAATTTCTGCTTGCATCTTCTACAAGCAGTACAACTGGTCA TTTAGTGTCTCTGATGGCCCCAAGTTCATTCGACTTCACTTCAAGCTAGTCACATATTCAGGGTTAAACATATCTAAGGCCTTGTTCTCCATCAACGTTG GTCCGCATACACTGATAACTACTTCAGATTCATCCTATTCTAAATATTCCCCAAATAGCGATTATGCTATCAGGGAATTCTGTGTCAATATGGATGGCCA GATATTAAATGTAACTTTCACCCCTTCATCTAAGGTTTTCGGTGCCTATGCTTTTATCAACAAGATTGAGATAGTCTCAATGCCATCAAAGCTTTACATT CAAGAAGATGCTCCATTTTCACTTGTAGGACATCCTTCTCCTTATTTCATGGGGAATTCTACAGCCCTCGAGATGATGTACAGGATGAACATAGGAGGAC ATGTGATCTCTGATCTAGAAGATACTTGCATGTTTCGTCGCTGGACCAGGGATGATGATTATTTCACGAGTAATGATGGAAACACAAGTATTGTTGAATC AGAAGTTGAAGTCAACTCGAGTTTACTGGTGCCCACATATGCTGCTCCACTCCTAGTTTATACCTCTGCCAGGACAATTCTACACACAACTGAAAACACA TACCGAGCTACATGGTTGTGCCCAGTTGATCATGGTTTCTATTACCTTGTTAGGCTCCATTTCTGCGAGATTTCGAGAACAATTAAGCGAGGCGGTCAAC GAGTTTTCAGCATTTATATCAACAATCAAACTGCTGAGGATCACGTAGATGTTTTCAATTGGAGCCATGGGACTGGAATTCCCATTTACAGAGACTACAT AGTGAACTTTTCAAGGTATGGTGAAGGCATAGAGTATCTATCTGTTGCAATAGGAGGTAATAATGGATCATCTGCTGAATATGGACGTCCAATTTTGAAC GGGCTGGAAATTTTCAAGTTGTCTGACATTTCCAACAATCTTGCGGGTACTCATCCATTTGGGATAATAGTTGCCCCCCATCCAAATTTGGGCAATGGTG CGGTGAATATTTACCGGGTATGCATTGGTCTTTTGTATGCTCTTACGGCAATAGCATGGCTAGGCTTCTTTTGTTCATTGTTTTCAAAGGAGCAGCGTGA ATCCTCTAAGCAAGATCAATCATCAGGCCACTGCCGAATTTTTACAATTGCTGAGACAAAATCAGCAACCAATAATTTTGCAGATAACTTACTCATTGGA AACGGTGGGTTTGGGACAGTCTACAAGGGATCAATTGATGGTGGCATATCAAGCATTGCTATAAAGCGCGCCAATCCAAGTTCACACCAGGGTTTGAAAG AGTTCCAAACTGAAATCTCCATGCTCTCAAGGCTCAGGCACAGCCACCTAGTATCTTTGGTCGGATATTGCATGGAGGAAAAAGAAATGATACTCGTTTA TGAGTATATGGCTCAAGGCACACTGCGTGATCATCTCTACAAGACACAGAAACCCCCTCTTCAATGGAAACAGAGGCTTAGGATTTGTATTGGTGCCGCA CGAGGGCTGCACTACCTCCACACGGGTGCAAAACATACTATCATTCACCGTGACATCAAGAGCACTAACATCTTGTTGGATGAAAAATGGGTGCCAAAGG TTTCAGATTTTGGGTTATCAAAAGTTGGTCCAAACAACATGACAGAGTCTAAGACACATGTTTCAACAATTGTTAAAGGTAGTTTCGGCTATCTGGATCC AGAGTATTATCGACGTCAAAAACTAACTGAAAAATCTGATGTGTACTCATTCGGGGTGGTGTTGTTTGAGGTTCTATGCGCCAGGCCTGCTGTGATCCCT ATGGGAGAAATTGAAGAGGAAGAGCATGAAAAAGTGAGTTTAGCTGAGTGGGCATTGCATTGCTGTCAAATGGGGACCCTTGATCAGATAATCGATCCAT ATCTAAGAGGTAAGATAGTTCCTGAGTGTTTCAAGACTTTCACAGATATAGCAAGGAAATGTTTGGCGGATAGGGGAAGTGAAAGGCCTTCAATGGGTGA TGTATTGTGGAATTTGGAGCTTGCAATGAAGCAGCAGGAAGGTGCCGGCCAGCAAGAGGCCGGCAGTGTTCGAAAAGAGGTCAATCGGAGGAAGAATGAT GATTTGTCCAAAATGATTGACGGTCAACGCTGCAGTGGCTTTGATATTTCAGATCCAACCCCAGGGGTGGAGTTTTCTGAGATTATGGCTCCGACTGGAC GTTGA
AA sequence Show only first row Show all	>Potri.011G165800.1 pacid=42782174 polypeptide=Potri.011G165800.1.p locus=Potri.011G165800 ID=Potri.011G165800.1.v4.1 annot-version=v4.1 MKTASPNGNSLLAPVMFLPFFFIACCTVPSSADKPSYYMPLDSFAVDCSPSVSPLDAGFPNDKKNEIDFSSVSKVYAVDPSSSEKPRISACIFYKQYNWS FSVSDGPKFIRLHFKLVTYSGLNISKALFSINVGPHTLITTSDSSYSKYSPNSDYAIREFCVNMDGQILNVTFTPSSKVFGAYAFINKIEIVSMPSKLYI QEDAPFSLVGHPSPYFMGNSTALEMMYRMNIGGHVISDLEDTCMFRRWTRDDDYFTSNDGNTSIVESEVEVNSSLLVPTYAAPLLVYTSARTILHTTENT YRATWLCPVDHGFYYLVRLHFCEISRTIKRGGQRVFSIYINNQTAEDHVDVFNWSHGTGIPIYRDYIVNFSRYGEGIEYLSVAIGGNNGSSAEYGRPILN GLEIFKLSDISNNLAGTHPFGIIVAPHPNLGNGAVNIYRVCIGLLYALTAIAWLGFFCSLFSKEQRESSKQDQSSGHCRIFTIAETKSATNNFADNLLIG NGGFGTVYKGSIDGGISSIAIKRANPSSHQGLKEFQTEISMLSRLRHSHLVSLVGYCMEEKEMILVYEYMAQGTLRDHLYKTQKPPLQWKQRLRICIGAA RGLHYLHTGAKHTIIHRDIKSTNILLDEKWVPKVSDFGLSKVGPNNMTESKTHVSTIVKGSFGYLDPEYYRRQKLTEKSDVYSFGVVLFEVLCARPAVIP MGEIEEEEHEKVSLAEWALHCCQMGTLDQIIDPYLRGKIVPECFKTFTDIARKCLADRGSERPSMGDVLWNLELAMKQQEGAGQQEAGSVRKEVNRRKND DLSKMIDGQRCSGFDISDPTPGVEFSEIMAPTGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.011G165800 [exp]	0	1
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.007G082300 [exp]	2.00	0.9288
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.001G063500 [exp]	6.63	0.8900
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024404 [exp]	7.34	0.9055
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.019G007227 [exp]	8.48	0.9039
AT4G24290			MAC/Perforin domain-containing...		Potri.001G305600 [exp]	9.27	0.8191
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G120800 [exp]	10.67	0.8606
AT2G34930			disease resistance family prot...		Potri.010G106900 [exp]	16.52	0.8703
AT5G38260			Protein kinase superfamily pro...		Potri.017G007900 [exp]	17.43	0.8468
					Potri.019G017304 [exp]	20.63	0.8791
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024566 [exp]	21.90	0.8727

Compare expression of checked genes

Potri.011G165800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.