Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04160 882 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 870 / 0 ATSBT5.4 Subtilase family protein (.1) AT5G67360 606 / 0 ARA12 Subtilase family protein (.1) AT4G34980 559 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT3G14067 558 / 0 Subtilase family protein (.1) AT5G51750 549 / 0 ATSBT1.3 subtilase 1.3 (.1) AT5G45650 546 / 0 subtilase family protein (.1) AT3G14240 540 / 0 Subtilase family protein (.1) AT2G05920 520 / 2e-174 Subtilase family protein (.1) AT1G04110 515 / 2e-172 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G468800 [exp] 1214 / 0 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.014G171600 [exp] 962 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.006G001600 [exp] 913 / 0 AT5G59810 970 / 0.0 Subtilase family protein (.1) Potri.001G469000 [exp] 869 / 0 AT5G59810 754 / 0.0 Subtilase family protein (.1) Potri.001G468900 [exp] 823 / 0 AT5G59810 730 / 0.0 Subtilase family protein (.1) Potri.011G050000 [exp] 812 / 0 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 805 / 0 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.007G102100 [exp] 805 / 0 AT2G04160 817 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 805 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016064 [exp] 879 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039086 [exp] 817 / 0 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10038774 [exp] 802 / 0 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10039087 [exp] 800 / 0 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039085 [exp] 787 / 0 AT5G59810 827 / 0.0 Subtilase family protein (.1) Lus10038772 [exp] 781 / 0 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10023048 [exp] 731 / 0 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10014591 [exp] 711 / 0 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10006505 [exp] 711 / 0 AT2G04160 745 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10032096 [exp] 642 / 0 AT1G20160 654 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.011G165900.1 pacid=42780990 polypeptide=Potri.011G165900.1.p locus=Potri.011G165900 ID=Potri.011G165900.1.v4.1 annot-version=v4.1 ATGAGGCTTTCAATTATCAGCTCTCCGTTACTTCTTTCATTCTTTATTTTCTCTCTTTTACAGCCACCAACTTTTGCCATAAAAAAGTCTTATGTAGTGT ATTTGGGATCACATTCACATGGTTTGGAGCCTACTCAAGCCGATATTGACCGAGTCACAGATTCTCATTATGAATTGCTGGGATTATTCACTGAAAGCAA AGAGAAGGCAAAGGAGAAAATCTTTTACTCTTACACTAACAGCATAAATGGTTTTGCCGCGGTCCTTGAAGAGGAAGAGGCATCAGCACTTGCCAAACAC CCAGACGTGGTATCAGTTTTCTTGAACAAAGCAAGGAAACTGCACACAACACATTCATGGAGCTTTCTTGGATTGGAGAAAGATGGGGTGGTTCCTCCAT CCTCACTTTGGAAGAAAGCAAGATACGGTGAAGATGTGATCATTGGTAACCTTGACACTGGTGTTTGGCCGGAATCGAAGAGCTTTAGTGATGAGGGACT GGGTCCAGTTCCATCAAAGTGGAGAGGAATCTGTCAGAATGCAACCAAAGAAGGTGTTCCTTGCAACAGGAAGCTGATTGGAGCCAGGTACTTTAACAAG GGTTATGGTTCAATTGGTGGCCATCTCAACTCCAGCTTTCAAACTGCACGCGATATTGAGGGCCATGGAACTCATACCCTATCAACAGCAGCTGGTAATT TTGTTCCAGGAGCTAATGTCTTTGGTAATGGCAAGGGAACTGCCAAGGGCGGATCACCTCGTGCCCGTGTAGCAGCTTACAAGGTATGCTGGCCAGCTGT AGGTGTGAATGAGGGTGGGTGCTATGAAGCAGACATCTTGGCCGGCTTCGATGTTGCCATAAGCGATGGCGTTGACGTGCTCTCAGTTTCCCTGGGTGGG GCTATCGATGAATACTCGGATGATGCTATTGCAATCGGTTCTTTCCATGCTTTCAAGAAGGGTATTACTGTGGTTGCCTCTGCTGGCAATTCAGGACCAG GACCAGGATCGGTATCAAATGTGGCACCTTGGCTGATAACAGTTGGTGCCAGCACACTTGATCGTGCCTTCACAATCTATGTTGCACTTGGAAACAGGAA GCACCTCAAGGGAGTAAGTCTTTCACAAAAAAGCTTGCCTGCTAGAAAATTCTATCCATTGATCAGTGGTGCACGGGCAAAGGCTTCTAATCAGTCTGAA GAAGATGCCAACCTTTGCAAACCTGGAACACTTGATTCCAAAAAGGTTAAAGGGAAGATATTGGTATGCCTTCGAGGGGTAAATCCAAGAGTAGAAAAGG GACATGTAGCTCTTCTTGCTGGGGCTGTTGGGATGATTTTGGCTAATGATGAAGAATCTGGCAATGGCATTCTTGCCGACGCTCATGTACTTCCTGCTGC ACACATCATCTCTACAGATGGTCAAGCTGTCTTTTCCTACCTCAATTCTACCAAGGACCCTTGGGCGTATATCACCAATGTAAGGACAGAATTGGGAACA AAGCCAGCTCCATTTATAGCTTCTTTCTCATCCAGGGGGCCTAATATCCTTGAAGAATCAATCCTCAAGCCTGATATCACTGCTCCCGGTGTCAGTGTAA TTGCTGCTTTCACTCTAGCAACAGGACCAACTGATACAGCTTACGATAAGCGCAGGATTCCCTTCAACACTGAATCTGGCACTTCAATGTCATGCCCTCA TGTTTCTGGAATTGTTGGCCTTCTAAAATCACTCCATCCAGATTGGAGTCCTGCTGCTATCAGATCGGCTATCATGACAACTGCAACAACAAGAGATAAC AATGGGGATCCAATATTGGATTCGTCCAACACCAGGGCAACTCCATTTGCATACGGTGCAGGACATGTGCAGCCAAACCGTGCAGCAGATCCTGGTCTAG TTTATGATCTCACTGTTAATGATTTCTTGAACTATTTATGCAGCCGAGGCTATACTGCAAAAGACCTGAAATTATTCACAGATAAGCCATACACTTGTCC AAAGTCATTCAGTTTGACAGACTTCAACTATCCTTCAATCTCAGCAATTAATCTTAATGACACCATAACAGTTACTCGAAGAGTTAAAAATGTTGGTTCT CCTGGCAAATACTATATCCATGTCAGGGAACCAACCGGAGTGTTAGTTTCGGTTGCGCCTACCACCTTAGAGTTTAAGAAACTAGGTGAGGAGAAGACAT TTAAGGTTACATTCAAACTTGCCCCAAAATGGAAGCTTAAAGATTATACATTTGGGATATTGACATGGTCCGATGGTAAGCACTTCGTCAGGAGTCCTCT GGTGGTGAGGCCTTACAGGAGTTATTGA
AA sequence Show only first row Show all	>Potri.011G165900.1 pacid=42780990 polypeptide=Potri.011G165900.1.p locus=Potri.011G165900 ID=Potri.011G165900.1.v4.1 annot-version=v4.1 MRLSIISSPLLLSFFIFSLLQPPTFAIKKSYVVYLGSHSHGLEPTQADIDRVTDSHYELLGLFTESKEKAKEKIFYSYTNSINGFAAVLEEEEASALAKH PDVVSVFLNKARKLHTTHSWSFLGLEKDGVVPPSSLWKKARYGEDVIIGNLDTGVWPESKSFSDEGLGPVPSKWRGICQNATKEGVPCNRKLIGARYFNK GYGSIGGHLNSSFQTARDIEGHGTHTLSTAAGNFVPGANVFGNGKGTAKGGSPRARVAAYKVCWPAVGVNEGGCYEADILAGFDVAISDGVDVLSVSLGG AIDEYSDDAIAIGSFHAFKKGITVVASAGNSGPGPGSVSNVAPWLITVGASTLDRAFTIYVALGNRKHLKGVSLSQKSLPARKFYPLISGARAKASNQSE EDANLCKPGTLDSKKVKGKILVCLRGVNPRVEKGHVALLAGAVGMILANDEESGNGILADAHVLPAAHIISTDGQAVFSYLNSTKDPWAYITNVRTELGT KPAPFIASFSSRGPNILEESILKPDITAPGVSVIAAFTLATGPTDTAYDKRRIPFNTESGTSMSCPHVSGIVGLLKSLHPDWSPAAIRSAIMTTATTRDN NGDPILDSSNTRATPFAYGAGHVQPNRAADPGLVYDLTVNDFLNYLCSRGYTAKDLKLFTDKPYTCPKSFSLTDFNYPSISAINLNDTITVTRRVKNVGS PGKYYIHVREPTGVLVSVAPTTLEFKKLGEEKTFKVTFKLAPKWKLKDYTFGILTWSDGKHFVRSPLVVRPYRSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.011G165900 [exp]	0	1
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Potri.013G139670 [exp]	44.63	0.8059
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Potri.003G196000 [exp]	44.89	0.7504
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Potri.019G028700 [exp]	49.79	0.8042
ATCG00730		ATCG00730.1, PE...	photosynthetic electron transf...		Potri.013G088900 [exp]	56.70	0.8021
					Potri.007G062041 [exp]	57.96	0.8007
ATCG01110		ATCG01110.1, ND...	NAD(P)H dehydrogenase subunit ...		Potri.013G074650 [exp]	58.24	0.8017
ATCG01090		ATCG01090.1, ND...	NADPH dehydrogenases (.1)		Potri.013G074950 [exp]	60.24	0.7958
AT2G21180			unknown protein		Potri.004G167700 [exp]	61.48	0.7193
AT1G14820			Sec14p-like phosphatidylinosit...		Potri.004G046501 [exp]	68.99	0.7884
ATCG00280		ATCG00280.1, PS...	photosystem II reaction center...		Potri.008G208700 [exp]	75.36	0.7955

Compare expression of checked genes

Potri.011G165900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.