Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13230 368 / 4e-131 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G469200 [exp] 437 / 2e-158 AT3G13230 367 / 1e-130 RNA-binding KH domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008345 [exp] 388 / 5e-139 AT3G13230 373 / 3e-133 RNA-binding KH domain-containing protein (.1) Lus10027099 [exp] 392 / 1e-138 AT3G13230 373 / 6e-131 RNA-binding KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.011G166000.1 pacid=42780997 polypeptide=Potri.011G166000.1.p locus=Potri.011G166000 ID=Potri.011G166000.1.v4.1 annot-version=v4.1 ATGCAGTCCAGCAAAGCCCCTGCATCAATGGAAGTTGAAACCCGTGAACATAAGTCTCAGGGAGCTTTGCCTGCAAAGCCAAAGTTTGAGCCATTGAAGG CTCATGAGATGTCTGATGGTCGAGTTCAGTTTAGAAAAGTCTCGGTTCCACCACACCGGTATTCACCTCTGAAGAAAGCATGGATGGAAATCTACACTCC AATATATGAGCAAATGAAGATTGATGTCCGTATGAACCTCAAAGCTAGGAAGGTTGAGTTGAAAACTAGATCAGACACGCCTGATGTTAGTAACCTGCAA AAGTGTGCTGATTTCGTGCATGCTTTTATGCTAGGTTTTGATGTGATAGATGCCATTGCTCTTTTGCGTTTGGACGAGCTATATGTTGAATCTTTTGAAA TCAAAGATGTTAAAACTCTTCGAGGTGAGCATTTGTCTCGGGCCATTGGGAGACTGTCTGGTAAAGGTGGCAAAACAAAGTTTGCCATTGAGAACGCTAC CAAGACAAGGATTGTGATTGCTGACACCAAGATTCACATATTAGGATCTTTTCAAAATATCAAAGTTGCAAGGGATTCTCTTTGCAGCCTCATTTTAGGG TCTCCTGCTGGAAAGGTATACTCAAAACTTAGACAAGTTACAGCTAGATTGGCTGAGAGATTCTGA
AA sequence Show only first row Show all	>Potri.011G166000.1 pacid=42780997 polypeptide=Potri.011G166000.1.p locus=Potri.011G166000 ID=Potri.011G166000.1.v4.1 annot-version=v4.1 MQSSKAPASMEVETREHKSQGALPAKPKFEPLKAHEMSDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDVRMNLKARKVELKTRSDTPDVSNLQ KCADFVHAFMLGFDVIDAIALLRLDELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADTKIHILGSFQNIKVARDSLCSLILG SPAGKVYSKLRQVTARLAERF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13230			RNA-binding KH domain-containi...		Potri.011G166000 [exp]	0	1
AT3G05810			unknown protein		Potri.013G007600 [exp]	1.41	0.8282
AT2G18400			ribosomal protein L6 family pr...		Potri.007G024900 [exp]	1.41	0.8745
AT4G35987			S-adenosyl-L-methionine-depend...		Potri.007G057000 [exp]	3.31	0.7799
AT2G35605			SWIB/MDM2 domain superfamily p...		Potri.005G078400 [exp]	4.47	0.8129
AT4G30330			Small nuclear ribonucleoprotei...		Potri.006G174000 [exp]	4.89	0.8107
AT3G59650			mitochondrial ribosomal protei...		Potri.013G126200 [exp]	5.74	0.8275
AT2G20060			Ribosomal protein L4/L1 family...		Potri.004G004800 [exp]	7.48	0.7896
AT1G57540			unknown protein		Potri.005G002900 [exp]	7.74	0.8153
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.014G095400 [exp]	8.30	0.7444
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.012G024400 [exp]	8.48	0.7402

Compare expression of checked genes

Potri.011G166000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.