Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13235 600 / 0 DDI1 DNA-damage inducible 1, ubiquitin family protein (.1.2.3) AT3G52590 45 / 9e-06 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT2G36170 45 / 9e-06 Ubiquitin supergroup;Ribosomal protein L40e (.1) AT3G62250 45 / 2e-05 UBQ5 ubiquitin 5 (.1) AT2G47110 44 / 2e-05 UBQ6 ubiquitin 6 (.1.2) AT1G23410 44 / 3e-05 Ribosomal protein S27a / Ubiquitin family protein (.1) AT4G05050 43 / 0.0001 UBQ11 ubiquitin 11 (.1.2.3.4) AT3G09790 44 / 0.0002 UBQ8 ubiquitin 8 (.1) AT1G65350 43 / 0.0002 UBQ13 ubiquitin 13 (.1) AT4G02890 42 / 0.0002 UBQ14 Ubiquitin family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G469300 [exp] 694 / 0 AT3G13235 613 / 0.0 DNA-damage inducible 1, ubiquitin family protein (.1.2.3) Potri.016G077200 [exp] 45 / 1e-05 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.012G024300 [exp] 45 / 1e-05 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.015G007100 [exp] 45 / 1e-05 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.004G194000 [exp] 45 / 1e-05 AT3G52590 210 / 3e-71 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.016G077000 [exp] 44 / 1e-05 AT3G52590 194 / 1e-65 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.001G025300 [exp] 44 / 3e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Potri.012G114000 [exp] 44 / 3e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Potri.002G190000 [exp] 44 / 3e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007088 [exp] 575 / 0 AT3G13235 587 / 0.0 DNA-damage inducible 1, ubiquitin family protein (.1.2.3) Lus10020464 [exp] 550 / 0 AT3G13235 546 / 0.0 DNA-damage inducible 1, ubiquitin family protein (.1.2.3) Lus10008873 [exp] 45 / 1e-05 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10030894 [exp] 44 / 4e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 44 / 4e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10032107 [exp] 43 / 0.0002 AT5G40630 136 / 4e-41 Ubiquitin-like superfamily protein (.1) Lus10018367 [exp] 42 / 0.0003 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0214 [poplar] [flax] UBA PF00627 [poplar] [flax] UBA UBA/TS-N domain CL0129 [poplar] [flax] Peptidase_AA PF13650 [poplar] [flax] Asp_protease_2 Aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.011G166100.1 pacid=42781558 polypeptide=Potri.011G166100.1.p locus=Potri.011G166100 ID=Potri.011G166100.1.v4.1 annot-version=v4.1 ATGAGAATTACTGTAATGACAGCAGATGAACAGATCATATCTCTTGAAGTTGATCCTCATGAATCTGTTGAGAATGTGAAAGCTTTACTTGAAGTTGAGA CACAGGTGCCTCTCCAGCAGCAGCAGCTGCTATATAATGGGAGGGAGATGAGAAATAATGAGAAATTGAGTGCATTAGGCGTTAAGGATGAGGATTTGGT CATGATGGTCTCTAATGCTGCTGCTCTTAGTGCCCCCTCCAATAATTTGGGCTTAAATCCTGATGGATCTGCTGTGAACCCTGGAGCTTTCCAGCAGCAA CTTCGAAATGATTCTAATACAATGGCTCAACTATTTCAGGCTGATCCTGAACTTGCCCAAGTTATTCTTGGAAATGATCTCAACAAACTCCAGGACCTTC TAAGGCAACGCCATCGTCAAAGATCTGAATTACGTCGTCAACAAGAAGAGGAGTTTGCCCTCCTTGAAGCAGACCCCTTTGATGTAGAGGCACAGAAGAA AATCGAAGCTGCCATTCGTCAGAAAGGAATCGATGAGAACTGGGCAGCGGCCTTGGAATACAACCCTGAAGCTTTTGCCAGAGTGATTATGCTGTACGTT GATATGGAAGTTAATGGTGTCCCTTTAAAGGCATTCGTTGATAGTGGTGCTCAGTCCACAATAATATCAAAAAGCTGTGCTGAGCGATGTGGATTGTTAA GACTTCTAGATCAACGTTATAAAGGCATTGCCCATGGAGTTGGACAATCAGAGATATTGGGTCGTATTCATGTAGCTCCAATCAAGATTGGGAATATATT TTATCCTTGTTCCTTCATGGTACTGGATTCTCCTAATATGGAATTCCTCTTTGGGCTTGATATGCTTCGCAAGCACCAGTGTATTATTGATCTAAAGGAG AATGTTCTGAGAGTGGGTGGTGGTGAAGTTTCTGTCCCATTTTTACAAGAAAAGGACATTCCACCTCGTTTTCTTGATGAAGAGAGGTATTCAAAAGAAG CATCCAGCTCAGGAAACCCAGTGACATCAGGAAAAGCGGAGAAGAAGAATGATCCACCGGCCATGGGTCAATCGTCTGGGGTTGCACGCAGCAGTGTGAC ACAGGGACCTGACTTTGAAGCTAAAGTTGCAAAGCTTGTTGAGCTGGGGTTTGGAAGAGAGGCAGTTATACAAGCTCTTAAATTATTTGATGGAAATGAA GAACAGGCTGCTGGGTTTCTTTTTGGCGGCTGA
AA sequence Show only first row Show all	>Potri.011G166100.1 pacid=42781558 polypeptide=Potri.011G166100.1.p locus=Potri.011G166100 ID=Potri.011G166100.1.v4.1 annot-version=v4.1 MRITVMTADEQIISLEVDPHESVENVKALLEVETQVPLQQQQLLYNGREMRNNEKLSALGVKDEDLVMMVSNAAALSAPSNNLGLNPDGSAVNPGAFQQQ LRNDSNTMAQLFQADPELAQVILGNDLNKLQDLLRQRHRQRSELRRQQEEEFALLEADPFDVEAQKKIEAAIRQKGIDENWAAALEYNPEAFARVIMLYV DMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGNIFYPCSFMVLDSPNMEFLFGLDMLRKHQCIIDLKE NVLRVGGGEVSVPFLQEKDIPPRFLDEERYSKEASSSGNPVTSGKAEKKNDPPAMGQSSGVARSSVTQGPDFEAKVAKLVELGFGREAVIQALKLFDGNE EQAAGFLFGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Potri.011G166100 [exp]	0	1
AT1G30300			Metallo-hydrolase/oxidoreducta...		Potri.011G081600 [exp]	3.16	0.9347
AT3G48820			Glycosyltransferase family 29 ...		Potri.015G104100 [exp]	3.16	0.9224
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.014G073800 [exp]	3.46	0.9311
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Potri.001G007800 [exp]	6.32	0.9259	PP2.4
AT2G34560			P-loop containing nucleoside t...		Potri.004G065100 [exp]	6.92	0.9256
AT1G36050			Endoplasmic reticulum vesicle ...		Potri.002G094400 [exp]	7.14	0.9263
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Potri.008G219700 [exp]	9.79	0.9261
AT1G16170			unknown protein		Potri.001G040300 [exp]	9.89	0.9244
AT4G16800			ATP-dependent caseinolytic (Cl...		Potri.003G080800 [exp]	12.60	0.8698
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Potri.010G071000 [exp]	16.24	0.9240

Compare expression of checked genes

Potri.011G166100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.