Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-VCS.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13300 1202 / 0 VCS VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G13290 1176 / 0 VCR varicose-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G469500 [exp] 1909 / 0 AT3G13300 1236 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G001400 [exp] 1191 / 0 AT3G13290 1170 / 0.0 varicose-related (.1) Potri.016G002100 [exp] 640 / 0 AT3G13300 714 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039116 [exp] 1130 / 0 AT3G13290 1233 / 0.0 varicose-related (.1) Lus10038742 [exp] 1003 / 0 AT3G13300 733 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10038767 [exp] 480 / 3e-156 AT3G13300 528 / 3e-175 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039096 [exp] 132 / 4e-33 AT3G13290 131 / 2e-33 varicose-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF16529 [poplar] [flax] Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein
Representative CDS sequence Show only first row Show all	>Potri.011G166400.1 pacid=42780579 polypeptide=Potri.011G166400.1.p locus=Potri.011G166400 ID=Potri.011G166400.1.v4.1 annot-version=v4.1 ATGGCATCCCGAAATCATCACCAACAGCAGCCATCACCATCACATTCTCCTCCTCTTGACATGCACACATTCTTCATGCCCACACCCACTTCACCACCAC CACCCCAAAACCCTTCACCCCCTCTTCCTCCCAACCTCATGGTTCTTCCACTCCAACAAATCCCTTCCTCTTCTTATCCTCCCCCCACTGGGACCCAACA CTTCCCCTTCCCCTTCGCACCCTCTTACCCTCCCCAACAAAACCCTAACCCAAACAACCCACCACCTCTTGCTAACATGCACCCCCAACGTTCCCTCTCC TATCCTACACCCCCTCTCACCCCGAACCAACAACTCCAAGACCGTTCTGGTGCCGAAATCATGGCCCTCCTCCGCCCCCCTCAAAATCAAGAACCACCAC CACTCCCTCCGCCAGCCCAAGACTTATCCGGGGCTCTTAGCAATAATTTTATGGGTCCTGTTAGGACGCCTAGCTGTACTAGCAGTAAGATGCCTAAGGG CAGGAGGGTGGTTGGTGAAGATGTAGTGTATGATGTGGATGTTAGGTTGCCAGGAGAGGCACAGCCGCAGCTTGAAGTTACGCCGATAACCAAGTACATT TCGGATCCTCAGCTGTGTTTAGGAAGGCAAATTGCTGTTAATAAGAGTTATATTTGTTATGGGTTGAAGCAAGGGACTATTCGGATTCTTAATATCAATA CTGCGTTGAGGTCTTTGTTTCGGACTCAGTCTCAGAGGGTCACTTGCATGGCTTTTTTTGCTGAGGATGTTCATCTTTTGGCTAGTGCTGGAATAGATGG ACGGATTAATGTCTGGAAGATCTCTGAAGGTCCAGATGAGGAAGATAAGCCACAGATTACAGGAAAGACTATTATTGCTATCCAAGTAGTTGGTGAGGGG GAAATAAAGAACCCAAAAGTCTGTTGGCATTGTTATAAACAGGAAATTTTGGTGGTCGGAGTTGGTAAACGAGTTCTGAGAATTGATACTAACAAAGTTG GAAAGGGTGAGGTCTATTCCTCTGAGGCACCTCTTCAATGTCCTGTTGACAAGCTGATTGATGGGATCCGATTCATTGGTAAACATGATGGAGAAGTCAC TGCTTTGTCAATGTGCCAATGGATGACCACCCGTTTGGTTTCTTCTTCTATGGATGGCACGATAAAGATTTGGGATGATCTCAAGGCATCACCACTTGTG GTTTTGAGACCGCACGATGGCCAACCTGTTTATTCAGCCATGTTCTTGACTGCTACTGACCAGCCAGATCACATCATACTTGTCACAGCAGGGCCTCAGA TTAGGGAATTGAAGATTTGGGTCTCAGCCAGTGAAGAAGGCTGGCTCCTGCCTAATGATTCTGATTTGTTGAATTGCACCCAGACATTAGAGCTGAAGAG TTCAGCTGAACCTCGAGTTGAGGAGGCATTCTTCAATCAAGTAGTAGCATTGTCTCAAATGGGCCTTATTTTACTTGCAAACGCAAAGAGGAATGCTATA TATGCTGTGCGCTTAGATTATGGTCCTAATCCAGCATCAACTCGTATGGATTGCATATCAGAGTTTACTGTCACTATGCCTATCTTGAGTTTAACCGGGA TGAGTGATGTCCTGCATGGCCAATCTGTCGCTCAAGTTTATTGCGTACAGACACAGGCAATTCAACAGTATACTTTGGAATTATGCCAGTGCCTGCCACC TTTGATGGAGAATGTGGGTTCAGAGAGGTCAGATTCCAGTGTAATGCATGATGTACCCAATGCTGATGGATATGCTGCCTTGGAGTCACGTGGAAGTAAA TATTCTGATGTTCTTGTGAGCTCCGCATCAGTTGATGTGGCCACTCTGCAACAAGATGCTCCCACTTCAAATATGGAATCCAGAACTATTGCTTTAGCCT CATCAACTAGTGATGCTAATATTGTTTGTGCTCCTTCGCCTCCTCATCCTCGCTTAACTAGAGATCTTACTGAGTTTGCAGTTGGGGGAAGATTTGAGCC AAGTCCTGCATCCAGCAACCAACCAGCTATCAATCATTCAGTTGACCAGCAAATGGACCCTATTTGTTCAAATTCATCCAATGTGCCTTCCTTGGATAGT GACTTGAGGAATGATGAGAGGAAAATTGTACAAGATAATAATTCTACCACTCTTAATCTTCCTGTTACATTTAAACATCCAACTCATCTAATAACCCCTT CTGAGATTTTAATGGGTGCTTCATCCTCTGAAATTACCAAAGTTAATGAGGGCAAAAGCGAGGTTGACTCAAATTTTCTGGATGTGGTTGTCAATAATGA TGTTGCCAATGCTGAGGTGGAAGTTAAAATAGTGGGTGAAACAAGATCCATTCAAGATGGTGAATTTAGTCTTCGAGGAGAATCCAAAAGGCCTGTTTTT GAAAACAAGGAAAAAATCTTTAGCTCCCAGGCTTCAGATCTTGATATTGAGATGACAAGAGAGTGCTGTGCGTTGCCACCAGAAACAAATATTGTGGAGG AACAGGGACAAGTTGATGGCGTTGGTGTTAGTGAGTCTCTTTCCCCACCTTCTAATGCTGGCAAAGATGAAGTCCATGACTCAACAAAAGATGTATCTGG AAAAGTTTCTGAGTCTTCTGTGTCAACAGTTGGTCCACTGTCAACTACTCCAAGTACAAAAGGGAAGAAGCAGAAGGGGAGAAATTCTCAAGCATCAGGT TCATCTTCTCAACCTCCAGGCACTTTTAATTCAGCAGATTCTTTGAACGAACCTGTCAGGGCTTCAAATCTCCTTGCTATGGATGGTGCTTTTTCTCAAA TTTTGGCTATGCAGCAATCGATTAATCAGCTAGTGATCACACAAAAGGAAATGCATAAGCAGATGTCAAATATGGTTGCAGTCCCTGTTTCTAAAGAATG TAGAAGACTAGAGACGGCTTTGGGACGGAGCATTGAGAAAGCCATCAAAGCGAATGCTGATGCTCCGTGTGCTCGATTTCAAGAAGAGAATGCAAAAAAT GAGAGGTTATTGCAAGATCACACGCAGCAGATAACAAGTCTGGTCTTGAATTTTATCAATAAGGACTTGCCAGCCATGTTAGAGAAAGCACCGAAGAAAG AATTGGCTTCAGTTGTACAAGGTGCAGTTCGCACAATATCTCCGGTCATTGATAAAACAGTATCTTCAGTTATAGTTGAGTCTTTCCAGAGAGGAGTTGG TGATAAGGCAGTGAATCAACTGGAAAAATCAGTTAATTCGAAACTTGAGGCTACTGTTGCTAGGCAAATTCAAGCACAGTTTCAAACTTCTGGCAAGCAA GCTCTCCAGGATTCTTTGAAGGCTGGTCTGGAAGCCTCAGTAATTCCTGCCTTTGAGATGTCATGCAAAGCCATGTTTGATCAAGTAGATGCTGCCTTTC AGAGAGGGATGGTCGAGCATACAGCTGCAGCACAGCAGCATTTTGAAGCTGCCCATTCTTCTTTGGCACTCACTTTAAGGGATTCAATCAACTCAGCATC GTCATTGACAAAAACCTTGAGCATGGAGTTGGCTGATAGTCAAAGACAGCTGTTAGCTATTGCCGCAAACTCAGGTGCAACAAATCCATCGGCCACGCAA CCTAGCGACGGACCCTTGGCTAGCTTCCAGGAGAAGGTTGAAACACAGTTGGATCCAACGAAAGAGCTAAAAAGATTAATATCTGAATGCAAATACGACG AGGCTTTCACTATTGCGCTCCAAAGAAGTGACGTGGCTATTGTATCCTGGCTGTGCAGTCAGGTTGGTTTGCAGGGTATCATGTCTCTGTCTCCCCTCCC TCTAAGCCAGGGAGTATTACTCTCTCTGCTACAGCAGCTGGCCTGTGATATAAACAATGATACTCCCCGAAAGCTTGAGTGGATGACGGCGGTGGCAGCT GCAATACTGCCAACTGACCAAATGATTGTATTATACGCACGGCCAATTGTTGAGCAAGTCGTTGAGATTGTGAACCGTGCAAGGACCTCACCTGCCGTCA CTGGTGCCGAGCTTGCAAGCATCCGCGTTCTCATGCATGTCATTAATTACTTGCTGGTGACCTGTAAACGATGA
AA sequence Show only first row Show all	>Potri.011G166400.1 pacid=42780579 polypeptide=Potri.011G166400.1.p locus=Potri.011G166400 ID=Potri.011G166400.1.v4.1 annot-version=v4.1 MASRNHHQQQPSPSHSPPLDMHTFFMPTPTSPPPPQNPSPPLPPNLMVLPLQQIPSSSYPPPTGTQHFPFPFAPSYPPQQNPNPNNPPPLANMHPQRSLS YPTPPLTPNQQLQDRSGAEIMALLRPPQNQEPPPLPPPAQDLSGALSNNFMGPVRTPSCTSSKMPKGRRVVGEDVVYDVDVRLPGEAQPQLEVTPITKYI SDPQLCLGRQIAVNKSYICYGLKQGTIRILNINTALRSLFRTQSQRVTCMAFFAEDVHLLASAGIDGRINVWKISEGPDEEDKPQITGKTIIAIQVVGEG EIKNPKVCWHCYKQEILVVGVGKRVLRIDTNKVGKGEVYSSEAPLQCPVDKLIDGIRFIGKHDGEVTALSMCQWMTTRLVSSSMDGTIKIWDDLKASPLV VLRPHDGQPVYSAMFLTATDQPDHIILVTAGPQIRELKIWVSASEEGWLLPNDSDLLNCTQTLELKSSAEPRVEEAFFNQVVALSQMGLILLANAKRNAI YAVRLDYGPNPASTRMDCISEFTVTMPILSLTGMSDVLHGQSVAQVYCVQTQAIQQYTLELCQCLPPLMENVGSERSDSSVMHDVPNADGYAALESRGSK YSDVLVSSASVDVATLQQDAPTSNMESRTIALASSTSDANIVCAPSPPHPRLTRDLTEFAVGGRFEPSPASSNQPAINHSVDQQMDPICSNSSNVPSLDS DLRNDERKIVQDNNSTTLNLPVTFKHPTHLITPSEILMGASSSEITKVNEGKSEVDSNFLDVVVNNDVANAEVEVKIVGETRSIQDGEFSLRGESKRPVF ENKEKIFSSQASDLDIEMTRECCALPPETNIVEEQGQVDGVGVSESLSPPSNAGKDEVHDSTKDVSGKVSESSVSTVGPLSTTPSTKGKKQKGRNSQASG SSSQPPGTFNSADSLNEPVRASNLLAMDGAFSQILAMQQSINQLVITQKEMHKQMSNMVAVPVSKECRRLETALGRSIEKAIKANADAPCARFQEENAKN ERLLQDHTQQITSLVLNFINKDLPAMLEKAPKKELASVVQGAVRTISPVIDKTVSSVIVESFQRGVGDKAVNQLEKSVNSKLEATVARQIQAQFQTSGKQ ALQDSLKAGLEASVIPAFEMSCKAMFDQVDAAFQRGMVEHTAAAQQHFEAAHSSLALTLRDSINSASSLTKTLSMELADSQRQLLAIAANSGATNPSATQ PSDGPLASFQEKVETQLDPTKELKRLISECKYDEAFTIALQRSDVAIVSWLCSQVGLQGIMSLSPLPLSQGVLLSLLQQLACDINNDTPRKLEWMTAVAA AILPTDQMIVLYARPIVEQVVEIVNRARTSPAVTGAELASIRVLMHVINYLLVTCKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Potri.011G166400 [exp]	0	1	Pt-VCS.2
AT2G01900			DNAse I-like superfamily prote...		Potri.016G101966 [exp]	2.00	0.8266
AT5G62960			unknown protein		Potri.012G082400 [exp]	6.32	0.7842
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.010G023500 [exp]	10.09	0.7582
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Potri.002G049300 [exp]	10.58	0.7811
AT1G04900			Protein of unknown function (D...		Potri.001G314700 [exp]	13.41	0.7359
					Potri.011G118166 [exp]	16.34	0.8070
AT4G24530			O-fucosyltransferase family pr...		Potri.002G105800 [exp]	16.88	0.7655
AT2G24640		UBP19	ubiquitin-specific protease 19...		Potri.018G009500 [exp]	23.49	0.7767
AT3G47610			transcription regulators;zinc ...		Potri.012G068900 [exp]	24.33	0.7349
AT2G34580			unknown protein		Potri.004G132600 [exp]	24.33	0.7613

Compare expression of checked genes

Potri.011G166400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.