Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AGA1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55740 1153 / 0 RS1, ATSIP1 raffinose synthase 1, seed imbibition 1 (.1) AT3G57520 1003 / 0 RS2, ATSIP2 raffinose synthase 2, seed imbibition 2 (.1.2.3) AT5G20250 847 / 0 RS6, DIN10 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) AT5G40390 531 / 5e-179 RS5, SIP1 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) AT4G01970 315 / 3e-95 RS4, ATSTS raffinose synthase 4, stachyose synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G052800 [exp] 987 / 0 AT3G57520 1290 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Potri.016G054700 [exp] 972 / 0 AT3G57520 1278 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Potri.018G126400 [exp] 868 / 0 AT5G20250 1218 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Potri.006G065700 [exp] 863 / 0 AT5G20250 1154 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Potri.015G086400 [exp] 749 / 0 AT3G57520 827 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Potri.016G002300 [exp] 734 / 0 AT3G57520 758 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Potri.004G207900 [exp] 547 / 0 AT5G40390 1145 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.017G036700 [exp] 539 / 0 AT5G40390 1118 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.007G123400 [exp] 536 / 1e-180 AT5G40390 1147 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007537 [exp] 981 / 0 AT3G57520 1235 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Lus10017516 [exp] 828 / 0 AT5G20250 1145 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Lus10027679 [exp] 534 / 1e-179 AT5G40390 1040 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10022240 [exp] 339 / 2e-108 AT5G40390 744 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10022241 [exp] 204 / 5e-60 AT5G40390 342 / 2e-112 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10008771 [exp] 167 / 2e-47 AT5G40390 339 / 1e-112 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10039945 [exp] 72 / 9e-14 AT5G40390 164 / 8e-58 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10041370 [exp] 52 / 3e-07 AT5G40390 71 / 8e-15 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10014902 [exp] 45 / 0.0001 AT5G55500 254 / 2e-81 "beta-1,2-xylosyltransferase", ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE, beta-1,2-xylosyltransferase (.1) Lus10039946 [exp] 0 / 1 AT5G40390 123 / 9e-38 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF05691 [poplar] [flax] Raffinose_syn Raffinose synthase or seed imbibition protein Sip1
Representative CDS sequence Show only first row Show all	>Potri.011G166700.5 pacid=42781090 polypeptide=Potri.011G166700.5.p locus=Potri.011G166700 ID=Potri.011G166700.5.v4.1 annot-version=v4.1 ATGACAGTAGGGGCAGGGATATCAGTGGCAGACAGGAAATTGGTGGTGTTAGGGAATTGTGTGTTGAATGATGTCCATGACAACATTGAGATAACACCAG CTTCTGGGGGTGGTTTTATCAATGGAGCTTTCATTGGTGTCCGATCAGATCAAGTTGGTTGTCGAAGGGTCTTTCCTGTTGGAAAGCTCGAGGGATTGAG GTTTATGTGTGTTTTTCGATTCAAGATGTGGTGGATGACACAAAGGATGGGAAATTGTGGACAAGAAATTCCCTTTGAGACACAGTTTTTGATTGTTGAA GCTCGAGATGGATCTCGTTTTGACAATGGAGAGGAGCAATCTGCTTTGTATACCGTTTTCTTGCCAATTCTTGAAGGAGATTTTAGGGCTGTTCTTCAAG GGAATGAGCACAATGAGCTCGAGATTTGCTTGGAAAGTGGAGATCCTGCTGTTAAGGAATTTGAGGGGAGTCATTTAGTTTTTGTGGCAGCTGGTTCAGA TCCCTTTGATGTCATCACAAATGCAGTGAAGGCCGTGGAATCACATTTGCAGACATTTTCTCATCGTGAGAGGAAGAAGATGCCAGACATGCTGAACTGG TTTGGCTGGTGCACATGGGATGCTTTTTACACAGATGTCACTGCAGAGGGTGTGAAGCAAGGATTAGAGAGCTTCGAGAAAGGTGGAATTCCTCCAAAAT TTGTTATAATTGATGATGGATGGCAATCAGTCGGAATGGATCCCACTGGTATTGAGACTTTAGCTGATAATTCAGCCAACTTTGCAAACAGACTAACACA TATCAAAGAGAATCACAAATTCCAGAAAAATGGCAAAGAGGGTTACAGAATTGAGGATCCAGCATTGGGACTGACGCACACTGTGACCGAAATCAAAGAA CGACATGATTTGAAGTACGTTTATGTGTGGCATGCAATAACAGGATACTGGGGAGGGGTCAGGCCGGGTGGTGCTGAAATGGAACACTATGAACCCAAGC TGACTTACCCTATTTCTTCTCCTGGGGTTGAATCAAATGAGCATTGTGATGCTTTTAAAAGCATTGCCACAAATGGACTTGGCCTTGTGAATCCTGAAAA AGTGTTCAGGTTCTATGATGAACTTCACCACTATCTTTCGTCAGCTGGAATTGATGGGGTCAAAGTTGATGTTCAGAATATCCTTGAAACTCTCGGGGCA GGCCATGGTGGAAGAGTGAAACTTGCTAGGAAGTACCATCAAGCATTGGAGGCTTCTATTGCTAGAAACTTCCGTGACAATGGGATCATTTATTGTATGA GTCACAACACTGATGGCTTGTACAGTGCAAAGAGATCAGCTGTTATAAGGGCATCGGATGATTTCTGGCCAAGAGATCCAGCATCACACACAATTCATAT AGCATCAGTTGCTTACAATACCATTTTTCTTGGTGAATTTATGCAGCCGGATTGGGATATGTTTCATAGCCTACACCCAATGGCGGAATACCACGGAGCA GCCCGTGCTGTGGGAGGATGTGCCATCTATGTTAGTGACAAGCCTGGACAACATGACTTTAATCTACTGAAGAAGCTTGTGCTTCCTGATGGCTCTATAT TGAGGGCCAAACTTCCAGGACGACCAACAAGGGATTGCTTGTTTTCTGATCCTGCAAGAGATGGTAAAAGTCTCCTGAAGATATGGAACCTGAACGATTT CAATGGAGTCATAGGGGTCTTCAACTGCCAGGGAGCTGGATGGTGCAGGGTCGGAAAGACAAACCTTATCCATGACGAAAATCCTGGCACGATCACCGGT TCTGTTAGGGCTAAAGATGTTGATTATCTCCCTAGAGTCGCTTGTGATGGATGGACAGGCGATAGTGTATTGTATTCTCATGTTGGTGGAGAAGTAGTTT ACCTTCCAAAGGATGCAGGTATGCCACTCACATTGAAGTCTCGCGAGTATGAAGTTTTCACAGTGGTTCCTGTGAAGGAGCTAGCCAATGGGGTTAAATT TGCCCCCGTGGGTCTAGTCAAGATGTTTAATTCAGGAGGGGCTATCAAGGAGCTGCAATATGACTCCAGCACAACTGCGACTGTCAGCATGAAAGCTCGC GGCTGCGGCTTGTTTGGAGCATATTCATCTGCTCAACCCAAGAGAATATCAGTTGATTCTAAGGAAGTAGAGTTCGGTTTTGAAGAAGGAACTGGCTTGG TCACCATTGATTTGAGAGTTCCAGAGGAAGAGTTGTATCTCTGGAACATAACAGTAGAACTATAA
AA sequence Show only first row Show all	>Potri.011G166700.5 pacid=42781090 polypeptide=Potri.011G166700.5.p locus=Potri.011G166700 ID=Potri.011G166700.5.v4.1 annot-version=v4.1 MTVGAGISVADRKLVVLGNCVLNDVHDNIEITPASGGGFINGAFIGVRSDQVGCRRVFPVGKLEGLRFMCVFRFKMWWMTQRMGNCGQEIPFETQFLIVE ARDGSRFDNGEEQSALYTVFLPILEGDFRAVLQGNEHNELEICLESGDPAVKEFEGSHLVFVAAGSDPFDVITNAVKAVESHLQTFSHRERKKMPDMLNW FGWCTWDAFYTDVTAEGVKQGLESFEKGGIPPKFVIIDDGWQSVGMDPTGIETLADNSANFANRLTHIKENHKFQKNGKEGYRIEDPALGLTHTVTEIKE RHDLKYVYVWHAITGYWGGVRPGGAEMEHYEPKLTYPISSPGVESNEHCDAFKSIATNGLGLVNPEKVFRFYDELHHYLSSAGIDGVKVDVQNILETLGA GHGGRVKLARKYHQALEASIARNFRDNGIIYCMSHNTDGLYSAKRSAVIRASDDFWPRDPASHTIHIASVAYNTIFLGEFMQPDWDMFHSLHPMAEYHGA ARAVGGCAIYVSDKPGQHDFNLLKKLVLPDGSILRAKLPGRPTRDCLFSDPARDGKSLLKIWNLNDFNGVIGVFNCQGAGWCRVGKTNLIHDENPGTITG SVRAKDVDYLPRVACDGWTGDSVLYSHVGGEVVYLPKDAGMPLTLKSREYEVFTVVPVKELANGVKFAPVGLVKMFNSGGAIKELQYDSSTTATVSMKAR GCGLFGAYSSAQPKRISVDSKEVEFGFEEGTGLVTIDLRVPEEELYLWNITVEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55740		RS1, ATSIP1	raffinose synthase 1, seed imb...		Potri.011G166700 [exp]	0	1	AGA1.1
AT5G44680			DNA glycosylase superfamily pr...		Potri.008G081000 [exp]	1.73	0.7860
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Potri.013G154700 [exp]	8.12	0.6743	Pt-EXP2.8,PtrEXPA2
AT4G14750		IQD19	IQ-domain 19 (.1)		Potri.008G156700 [exp]	10.95	0.6605
AT1G77690		LAX3	like AUX1 3 (.1)		Potri.005G174000 [exp]	12.64	0.7130	PtrAUX7
AT5G20820			SAUR-like auxin-responsive pro...		Potri.006G137000 [exp]	16.12	0.6374	SAUR6
AT1G72490			unknown protein		Potri.001G166700 [exp]	17.43	0.6385
AT4G14750		IQD19	IQ-domain 19 (.1)		Potri.010G082600 [exp]	20.04	0.6487
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.003G052600 [exp]	21.21	0.6378
					Potri.006G103800 [exp]	21.42	0.6232
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.006G277900 [exp]	30.98	0.5708

Compare expression of checked genes

Potri.011G166700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.