Plant FIBer expression Database

Potri.011G166800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G56090 667 / 0 COX15 cytochrome c oxidase 15 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G469701
[exp]
465 / 3e-164 AT5G56090 430 / 9e-151 cytochrome c oxidase 15 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033332
[exp]
682 / 0 AT5G56090 655 / 0.0 cytochrome c oxidase 15 (.1)
Lus10034789
[exp]
675 / 0 AT5G56090 647 / 0.0 cytochrome c oxidase 15 (.1)
Lus10034065
[exp]
550 / 0 AT5G56090 527 / 0.0 cytochrome c oxidase 15 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0328 2heme_cytochrom PF02628 COX15-CtaA Cytochrome oxidase assembly protein
Representative CDS sequence
>Potri.011G166800.1 pacid=42781934 polypeptide=Potri.011G166800.1.p locus=Potri.011G166800 ID=Potri.011G166800.1.v4.1 annot-version=v4.1
ATGTTTCAAAGCAGAGTGTTTGCTTCAATCTTGAAGAGAAACAAAGGAGGATCTATCATCAACAATGCAATAACCAATCTCAGAGGAACAAAAATAACAC
CTTTCAATCACTTGAGAGACATCCATCAACAACAGAACCCATCATCAAGATCCTTCCTTTATGGCTTCAAATCACTCTCCAAGGGTCGTAACTGTCAGTA
TGTGCCATCATCAACGAGGAAAATATCAACTGTAGCTGCTTCTGTTGGAAGTGAAAGTAAAGAGGGTCTTAGATTGCTGGTAAATGGAGGGCCTAAAGCT
CAAAAAATGGTGGGTATATGGCTATTTGGCTCTGCTGCTTGGGTTTTCAGCATGGTGATTCTTGGTGGTGTTACACGGTTAACAAGGTCTGGTCTTTCAA
TGACTGATTGGAAATTTACTGGTGGTCTTCCTCCTTTATCAAACGAGGACTGGTTGATTGAGTTTGAGAAGTATAAGCAATCACCTGAGTATAAAATTGT
AAATAAAGGGATGAATGTTGAGGATTTCAAATTTATTTACTGGATGGAATATGCACATCGAATGTGGGGAAGGGGATTAGGGATCATTTTTGCTTTGCCA
TTTTCATGGTTTCTGAGAAAAGGGTATGTAACAGTGAGACTTGGAGCTAAACTTTGTGGTCTTTTTGCTCTCGGTGCTGGCCAAGGTTTAATTGGTTGGT
GGATGGTTAAAAGTGGTTTAGAGGAGCCAGCATCTGAATATGCTCAGCCGAGAGTAAGCCCTTACCGTCTTGCAGCGCATCTTACTTCGGCATTTGTTAT
TTATAGTGGGCTTTTCTGGACTGCTCTTTCTGTTGTAATGCCTGAACCCCCTGCGGAATCTTTAGCTTGGGTTCGTGGGGCGGCGAAGGTAAAGAGGCTT
GCCCTTCCTGTAAGCCTTATTGTAGGGGTTACTGCCGTGTCAGGAGCATTTGTAGCTGGAAATGATGCTGGGCATGCATTTAACACTTTCCCAAAGATGG
GTGATACATGGATTCCTGATGATATATTTGATTTGAAACCAGTAATTCGCAACTTTTTTGAAAATACATCGACAGTGCAGCTTGACCACCGTATCCTTGC
AATCACAAGCTTGACTTCAATTGGTGCTTTATGGTGGTTCACAAGAAAGTTGGACATACATCCAGCTGTGAAATCTTTGATTGGAGCGACTGTTGGCATG
GCTACTCTTCAGGTATCCTTGGGGATATCAACCCTTCTATCATATGTTCCTGTATCACTAGGAACTGCACATCAGGCTGGGGCTTTAACACTCCTGACGT
TTATGATTCTGCTCAATCACACTGTGCGGAAGCCATCCGCATCTCTTCTCAAGTCACTGCCTCAAGTTGTGAAGACAGCCATGTGA
AA sequence
>Potri.011G166800.1 pacid=42781934 polypeptide=Potri.011G166800.1.p locus=Potri.011G166800 ID=Potri.011G166800.1.v4.1 annot-version=v4.1
MFQSRVFASILKRNKGGSIINNAITNLRGTKITPFNHLRDIHQQQNPSSRSFLYGFKSLSKGRNCQYVPSSTRKISTVAASVGSESKEGLRLLVNGGPKA
QKMVGIWLFGSAAWVFSMVILGGVTRLTRSGLSMTDWKFTGGLPPLSNEDWLIEFEKYKQSPEYKIVNKGMNVEDFKFIYWMEYAHRMWGRGLGIIFALP
FSWFLRKGYVTVRLGAKLCGLFALGAGQGLIGWWMVKSGLEEPASEYAQPRVSPYRLAAHLTSAFVIYSGLFWTALSVVMPEPPAESLAWVRGAAKVKRL
ALPVSLIVGVTAVSGAFVAGNDAGHAFNTFPKMGDTWIPDDIFDLKPVIRNFFENTSTVQLDHRILAITSLTSIGALWWFTRKLDIHPAVKSLIGATVGM
ATLQVSLGISTLLSYVPVSLGTAHQAGALTLLTFMILLNHTVRKPSASLLKSLPQVVKTAM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G56090 COX15 cytochrome c oxidase 15 (.1) Potri.011G166800
[exp]
0 1
AT5G05520 Outer membrane OMP85 family pr... Potri.008G071800
[exp]
7.54 0.7539
AT2G20585 NFD6 nuclear fusion defective 6 (.1... Potri.017G014500
[exp]
9.48 0.7687
AT3G51010 unknown protein Potri.007G018300
[exp]
15.32 0.7359
AT4G21705 Tetratricopeptide repeat (TPR)... Potri.011G051500
[exp]
18.60 0.7610
AT2G26990 COP12, ATCSN2, ... FUSCA 12, CONSTITUTIVE PHOTOMO... Potri.001G222700
[exp]
24.24 0.6883 FUS12.2
AT1G06070 bZIP AtbZIP69 Basic-leucine zipper (bZIP) tr... Potri.007G130800
[exp]
32.68 0.6356
AT2G18465 Chaperone DnaJ-domain superfam... Potri.019G010000
[exp]
32.75 0.6766
AT3G47520 pNAD-MDH, MDH plastidic NAD-dependent malate... Potri.017G102000
[exp]
52.58 0.6778 NEMDH.1
AT1G67490 KNOPF, KNF, GCS... KNOPF, glucosidase 1 (.1.2) Potri.010G059000
[exp]
57.96 0.6429 Pt-GCS1.3
AT1G10840 TIF3H1 translation initiation factor ... Potri.014G147100
[exp]
67.08 0.7044 TIF3.5

Potri.011G166800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.