Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13320 627 / 0 ATCAX2, CAX2 cation exchanger 2 (.1) AT1G55730 627 / 0 ATCAX5 cation exchanger 5 (.1.2) AT1G55720 573 / 0 ATCAX6 cation exchanger 6 (.1) AT3G51860 350 / 1e-116 CAX1-LIKE, ATHCX1, ATCAX3, CAX3 cation exchanger 3 (.1) AT5G01490 344 / 1e-114 ATCAX4, CAX4 cation exchanger 4 (.1) AT2G38170 338 / 6e-112 RCI4, ATCAX1, CAX1 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G469800 [exp] 825 / 0 AT1G55730 630 / 0.0 cation exchanger 5 (.1.2) Potri.010G249200 [exp] 560 / 0 AT1G55730 573 / 0.0 cation exchanger 5 (.1.2) Potri.016G115500 [exp] 352 / 7e-118 AT3G51860 570 / 0.0 cation exchanger 3 (.1) Potri.006G099900 [exp] 348 / 2e-116 AT3G51860 563 / 0.0 cation exchanger 3 (.1) Potri.009G045800 [exp] 327 / 6e-108 AT3G51860 495 / 9e-174 cation exchanger 3 (.1) Potri.001G251200 [exp] 323 / 2e-106 AT3G51860 490 / 7e-172 cation exchanger 3 (.1) Potri.001G375500 [exp] 45 / 8e-05 AT1G53210 665 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027136 [exp] 642 / 0 AT3G13320 594 / 0.0 cation exchanger 2 (.1) Lus10034853 [exp] 562 / 0 AT1G55730 575 / 0.0 cation exchanger 5 (.1.2) Lus10033396 [exp] 559 / 0 AT1G55730 571 / 0.0 cation exchanger 5 (.1.2) Lus10006068 [exp] 494 / 3e-168 AT3G13320 516 / 1e-176 cation exchanger 2 (.1) Lus10032889 [exp] 472 / 2e-165 AT3G13320 434 / 7e-151 cation exchanger 2 (.1) Lus10009431 [exp] 376 / 3e-128 AT3G13320 404 / 3e-139 cation exchanger 2 (.1) Lus10027791 [exp] 333 / 3e-110 AT3G51860 575 / 0.0 cation exchanger 3 (.1) Lus10004819 [exp] 327 / 1e-107 AT2G38170 579 / 0.0 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10002490 [exp] 323 / 4e-106 AT3G51860 578 / 0.0 cation exchanger 3 (.1) Lus10035507 [exp] 320 / 2e-105 AT3G51860 579 / 0.0 cation exchanger 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [poplar] [flax] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Potri.011G166900.1 pacid=42781138 polypeptide=Potri.011G166900.1.p locus=Potri.011G166900 ID=Potri.011G166900.1.v4.1 annot-version=v4.1 ATGGATCAAAAGTTACAAGTGGCAGGGACTCAATCCCAACTTGAAATGGGATCATTAGCTGCAAATGAGTCATCACATGAGTTTGAGGATGAGAGTCTTT TTAGCCCTGAGTCAGTGATTCAAAAGATGCAACTTGGTCATATATCTGAATATGGATCAGCTCCTGGTGGTTTCCAACCTGGTGGTAGTAAGATGTGGAA GAATGTTGTGTATAAGAGCATAAAGACTGTAGTTTTTTCAAATAAACTCAATGTGCTCATAGCTTTTGGGCCTCTCACTATGCTCGTCCACATTTTGACT GGGCATAACGGATCGGTCTTCCTCCTGAGTCTATTGGGTATCATACCTTTGGCCGAACGTTTAGGTTATGCTACAGAGCAGCTAGCTATGTACACAGGAC CTACAGTTGGGGGTCTTCTAAATGCCACATTTGGAAATGCAACAGAACTCATCATAGCAATATATGCACTAAGAAACGGAATGATACGAGTTGTTCAGCT GTCATTATTAGGCTCAATTTTGTCAAACATGTTGTTGGTGCTTGGGTGTGCATTCTTCTGTGGTGGGCTTGTTTTTTACAGAAAAGAACAAGTTTTTAAC AAGGCATCTGCTATTGTGAATTCAGGATTGCTGCTGATGGCAGTCATGGGGCTACTCTTTCCTGCTGTCCTACATTTCACACACACCGAGGTGCACTATG GGAAGTCAGAGTTGGCTCTTTCGAGATTTAGTAGTTGCATTATGCTTGGGGTGTATGCAGCTTATCTTTTTTTCCAATTAAAGAGTCGAAAGGATCCATA CATTCCTCTGTCTGAGGACGAGAGTCAGAACAGGGAAAACGAAGGCGACAATGATGAGACTCCAGAGATTGGTAAATGGGAATCAGTAATCTGGCTTCTG ATAATGACAGCTTGGATCTCTGTCCTATCAGAATATTTAGTAGATGCCATAGAGGGAACATCTCATGCATGGAATATACCAATTGCATTTATAGGGGTTA TCTTGCTCCCAATTGTGGGGAATGCTGCAGAGCATGCGGGTGCTATTATGTTTGCTATGAAAGACAAGCTTGATATATCATTGGGAGTCGCAATAGGGTC ATCAACGCAGATATCTATGTTTGGAATTCCCTTTTGTGTTGTTGTTGGGTGGATAATGGGGAAGCCCATGGACTTAAACTTTCAGCTTTTTGAGACTGCA ACTCTTTTCATTACTGTCATCGTCGTGGCCTTCTTTCTGCAGGAAGGGTCTTCCAATTATTTCAAAGGATTGATGCTCATTCTTTGCTATGTAATTGTTG CTGCAAGTTTCTTTGTTCATGAAGATCCTCCTCCAGAAGATAAGTCATTAACACCATAG
AA sequence Show only first row Show all	>Potri.011G166900.1 pacid=42781138 polypeptide=Potri.011G166900.1.p locus=Potri.011G166900 ID=Potri.011G166900.1.v4.1 annot-version=v4.1 MDQKLQVAGTQSQLEMGSLAANESSHEFEDESLFSPESVIQKMQLGHISEYGSAPGGFQPGGSKMWKNVVYKSIKTVVFSNKLNVLIAFGPLTMLVHILT GHNGSVFLLSLLGIIPLAERLGYATEQLAMYTGPTVGGLLNATFGNATELIIAIYALRNGMIRVVQLSLLGSILSNMLLVLGCAFFCGGLVFYRKEQVFN KASAIVNSGLLLMAVMGLLFPAVLHFTHTEVHYGKSELALSRFSSCIMLGVYAAYLFFQLKSRKDPYIPLSEDESQNRENEGDNDETPEIGKWESVIWLL IMTAWISVLSEYLVDAIEGTSHAWNIPIAFIGVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVVGWIMGKPMDLNFQLFETA TLFITVIVVAFFLQEGSSNYFKGLMLILCYVIVAASFFVHEDPPPEDKSLTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Potri.011G166900 [exp]	0	1
AT2G34930			disease resistance family prot...		Potri.015G025200 [exp]	2.82	0.7057
AT2G34930			disease resistance family prot...		Potri.015G024600 [exp]	9.05	0.6601
AT1G20670			DNA-binding bromodomain-contai...		Potri.002G009100 [exp]	21.00	0.6393	BRD901
					Potri.009G086900 [exp]	31.93	0.6044
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.003G076100 [exp]	37.45	0.5742
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Potri.010G038400 [exp]	96.55	0.5181	ALPHA.8
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Potri.006G208600 [exp]	111.57	0.4899
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Potri.018G115000 [exp]	116.55	0.5466
AT4G36210			Protein of unknown function (D...		Potri.007G016100 [exp]	158.08	0.5021
AT5G41700		ATUBC8, UBC8	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.019G131400 [exp]	240.48	0.4906	UBC.10

Compare expression of checked genes

Potri.011G166900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.