Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13330 1682 / 0 PA200 proteasome activating protein 200 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G470600 [exp] 2130 / 0 AT3G13330 2595 / 0.0 proteasome activating protein 200 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008354 [exp] 1771 / 0 AT3G13330 2607 / 0.0 proteasome activating protein 200 (.1) Lus10027111 [exp] 1687 / 0 AT3G13330 1614 / 0.0 proteasome activating protein 200 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16507 [poplar] [flax] BLM10_mid Proteasome-substrate-size regulator, mid region
Representative CDS sequence Show only first row Show all	>Potri.011G167700.4 pacid=42782254 polypeptide=Potri.011G167700.4.p locus=Potri.011G167700 ID=Potri.011G167700.4.v4.1 annot-version=v4.1 ATGCATCTCTACAATGCGTGGCTGCCACCGCCAGTGGTGGAGGAGACGAAGAAAGAGAAAGACTCCTTCCGCACCGTGCTCAACTCCGTCAAGAACTCTT ACAAACCCGATGATCCTGATTCCGTTTACTCCACTCTCAAATGGATTTCCGTCCTCGAACTTTTTATTAAGGCGAAGAGCGAATTGAATTTGGAAGATGT AGCTGAACTCGTTCAATTTGGAATTGAGTTGTTCAATATTTCGCAGAATAAGCTTTACGCTCAGGTGAGATGGGGAAATTTGTTAGTGAGAGTGCTAAAT AAGTATAGAAAGAGGTTGGCTTTCAAAGTGCAATGGAGGCCTTTGTATGATACTCTTATTCATACTCATTTTACAAGGAACACTGGTCCGGAAGGGTGGA GATTGAGACAAAGGCATTTTCAGACTATTTCTTCACTTGTTCGGTCCTGCCGGAGGTTCTTTCCTGCTGGTTCGGCTTTGGAGATTTGGAATGAGTTCTG TTCTCTCTTGGAAAATCCATGGCATAATTCATCCTTTGAAGGATCTGGGTTTTTGAGACTGTTTTTGCCGACAAACTTGGAGAACCAGGACTTCTATACA GAAACTTGGGTTAAAAAGAGCTTGAACATGTGGGACTCGATACCAAATTCCCAATTCTGGAACAGCCAGTGGGCAGCTATCATAGCACGTGTTATAAAAA ACTATGACTTTATTGACTGGGAATGCTTCTTACCAATGCTTTTCAGTAGATTCTTGAACATGTTTGAGGTTCCTTTGGCAAATGGAAGTGCTTCATATCC ATTTTCCGTTGACGTTCCAAGATACACAAGATTCTTATTCTCCCATAAAACTTCCACCCCAGCAAAGGCCATTGCAAAGTCAATTGTCTATCTGCTTAAA CCTGGTGGTGCAGCTCAAGAGCTCTTCGGGAAATTGGGAAACCTCTTAGAACAATATTACCATCCATCTAATGGTGGTCGCTGGACTTATTCACTGGAGC GCTTTTTGCTTCATTTGGTAATTATGTTCCAGAAGCGCTTACAGCATGAGCAATGGAGCACAGATAACAATAGACAGGCTGAAATGTTTCTTGGAAGATC GGAAAGGACTTATTTTGTCAATGTTTTACTGAAGTTAATTGATCGCGGGCAATACAGCAAAGATGAACATCTTTCTGAGACAGTTGCTGCAGCAACTTCC ATTTTGTCATATGTGGAGCCCACTTTGGTTCTTCCATTTTTAGCATCTCGATTCCATTTGGCCTTGGAGACGATGACTGCCACCCACCAGTTGAAAACTG CAGTGATGTCAGTAGCATTTGCAGGACGTTCTCTGTGTCTCACATCCCTCTCAACTCGAGGGAAACAGGAAGATTGTGGTGGGGGTGATGATGCATATGT CGATCTCTTGACAATTTCACTATCCAATGCTTTACTTGGTATGGATGCTAATGACCCCCCCAAAACATTGGCAACCATGCAGTTAATTGGCTCCATATTT TCCAATATTGCTACTTTGGATGATAGTACCGATCAGCTATCATTCATGCCAATGATCCGGTTTTCTGAATGGTTGGATGAATTCTTGTGTCGCTTATTTT CATTGCTTCAACATCTAGAACCCAGCAGCGTTCTGCATGAAGGCCTACATTCATCGGCAACATCAGGAACTTTTCTTGTCGATGATGGTCCTTTCTACTA TTGTATGCTCGAAATCTTGCTCGGAAGACTATCTAAATCGCTATACAATCAGGCTTTGAGAAAAATTGCAAAGTTTGTGAGGACAAGTATTCTTCCTGGA GCAGTTGCAGAGGTTGGATTGCTTTGTTGTGCTTGTGTTCATTCAAACCCAGAAGCGGCTGTTGCTTCTCTTGTTGATCCAATCTTGTCATCTGTTATAT CCTCTTTGAAAGGAACGCCTGCAACGGGCTTTGGAGGGAGAGGGATTCCAGATGCCACAGTTTCAATTAAGGCCAAACCAACACTCTCTCCAGCTCTTGA AACAGCAATCGATTATCAATTAAAAATATTATCAGTTGCCATAAACTATGGAGGTCCTGCTCTTCTTCGGTGCAAGGATCAATTCAAAGAAGCTATCGTG TCAGCTTTTGAATCTCCCTCTTGGAAGGTTAATGGAGCCGGTGATCATCTCCTTCGATCCCTCCTTGGAAGCCTGATTGTTTATTATCCTATGGATCAAT ACAAGTCCATTTCAAGGCACCCAGCAGCTCTGGCATTAGAAGAATGGATCAGCGCAAAAGATTACAACAGTGATGGACCATCGATGGGGCCCAAGTGGCA TGTTCCAAATGATGATGAAGTTCAGTTTGCAAATGAACTTTTAAACCTTCATTTTCAATCAGCTTTAGATGACCTTTTGAAAATATGCCAAAATAAAATA CATTCCGATACAGGAAATGAGAAAGAGCACTTGAAAGTGACTCTTTTGCGTATTGATTCTTCACTGCAAGGTGTTTTATCTTGCTTACCTGATTTCAGCC CATCCTCCAGGAATGGGATTGTGGAAGATGCGAGTCATATTTCTTTCTTGATAGCTGGAGCAACTGGTTCAAGTGTTGGCAGTACTGGACTGCGTGAAAA AGCTGTTGAGATTATACATGCAGCTTGCAAATATATGTTAGAGGAAAAATCAGATGACAGCATCCTCTTGATACTCACTGTTCGTATCATGGATGCTTTG GGAAACTTTGGAAGTTTGGAGTATGAGGAGTGGTCGAATCACAGGCAGGCTTGGAAGTTGGAATCTGCTGCCATTTTAGAACCTCCAATGAATTTTATCG TGTCTTCTCATTCTCAAGGAAAGAAAAGGCCTAGGTGGGCTCTTATTGACAAGGCATACATGCATAGTACTTGGAGGTCATCACAATCATCCTATCATCT GTTTCGTATGAGTGGGAACTTCTCTCCACCAGACCATGCAATTCTTTTGATGGATGATCTGCTAAAACTTTCTTTGCATAGTTACGAAACTGTTCGCTCG CTTGCTGGAAAATCTCTGCTGAAGATGATTAAGAGATGGCCATCAATGATTTCAAAATGTGTGCTCTCTCTTACTGAACACTTGCGGAATCCCAGCTCAC CAGAATATGCAGTGCTGGGTTCTTGTACTGTCCTTTCTACACAAACAGTTCTCAAGCATTTGACAACAGATCCAAAAGCATTATCTTCTTTTCTTCTTGG GATTCTTTCAAGCTCGCATCATGAATCACTGAAAGCCCAGAAAGCTATTAATGAGCTTTTTGTTATGTACAACATCTACTTTCCGGGAGTGTCTAGAAGC ATTTTCAGGACATCAGATAATCACATAGATGGACCAAATTTTGCAGATTTGGTTTCTCAGATTGGATCAATGAGTTTTGATTCTTCTGGTTTGCATTGGC GGTACAACCTAATGGCTAACAGAGTACCTTTCCTGTTACTTTGTGATTGA
AA sequence Show only first row Show all	>Potri.011G167700.4 pacid=42782254 polypeptide=Potri.011G167700.4.p locus=Potri.011G167700 ID=Potri.011G167700.4.v4.1 annot-version=v4.1 MHLYNAWLPPPVVEETKKEKDSFRTVLNSVKNSYKPDDPDSVYSTLKWISVLELFIKAKSELNLEDVAELVQFGIELFNISQNKLYAQVRWGNLLVRVLN KYRKRLAFKVQWRPLYDTLIHTHFTRNTGPEGWRLRQRHFQTISSLVRSCRRFFPAGSALEIWNEFCSLLENPWHNSSFEGSGFLRLFLPTNLENQDFYT ETWVKKSLNMWDSIPNSQFWNSQWAAIIARVIKNYDFIDWECFLPMLFSRFLNMFEVPLANGSASYPFSVDVPRYTRFLFSHKTSTPAKAIAKSIVYLLK PGGAAQELFGKLGNLLEQYYHPSNGGRWTYSLERFLLHLVIMFQKRLQHEQWSTDNNRQAEMFLGRSERTYFVNVLLKLIDRGQYSKDEHLSETVAAATS ILSYVEPTLVLPFLASRFHLALETMTATHQLKTAVMSVAFAGRSLCLTSLSTRGKQEDCGGGDDAYVDLLTISLSNALLGMDANDPPKTLATMQLIGSIF SNIATLDDSTDQLSFMPMIRFSEWLDEFLCRLFSLLQHLEPSSVLHEGLHSSATSGTFLVDDGPFYYCMLEILLGRLSKSLYNQALRKIAKFVRTSILPG AVAEVGLLCCACVHSNPEAAVASLVDPILSSVISSLKGTPATGFGGRGIPDATVSIKAKPTLSPALETAIDYQLKILSVAINYGGPALLRCKDQFKEAIV SAFESPSWKVNGAGDHLLRSLLGSLIVYYPMDQYKSISRHPAALALEEWISAKDYNSDGPSMGPKWHVPNDDEVQFANELLNLHFQSALDDLLKICQNKI HSDTGNEKEHLKVTLLRIDSSLQGVLSCLPDFSPSSRNGIVEDASHISFLIAGATGSSVGSTGLREKAVEIIHAACKYMLEEKSDDSILLILTVRIMDAL GNFGSLEYEEWSNHRQAWKLESAAILEPPMNFIVSSHSQGKKRPRWALIDKAYMHSTWRSSQSSYHLFRMSGNFSPPDHAILLMDDLLKLSLHSYETVRS LAGKSLLKMIKRWPSMISKCVLSLTEHLRNPSSPEYAVLGSCTVLSTQTVLKHLTTDPKALSSFLLGILSSSHHESLKAQKAINELFVMYNIYFPGVSRS IFRTSDNHIDGPNFADLVSQIGSMSFDSSGLHWRYNLMANRVPFLLLCD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13330		PA200	proteasome activating protein ...		Potri.011G167700 [exp]	0	1
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.017G128300 [exp]	1.00	0.8991
AT5G53620			unknown protein		Potri.015G006700 [exp]	3.46	0.8416
AT1G50410			SNF2 domain-containing protein...		Potri.007G000700 [exp]	5.29	0.8551
AT5G57940		ATCNGC5	cyclic nucleotide gated channe...		Potri.018G106100 [exp]	6.24	0.8111	CNGC5.1
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Potri.001G066800 [exp]	9.64	0.7468
AT4G13780			methionine--tRNA ligase, putat...		Potri.001G317500 [exp]	10.24	0.8282
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.002G188700 [exp]	10.90	0.8272
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Potri.008G008100 [exp]	11.00	0.8192
AT3G09100			mRNA capping enzyme family pro...		Potri.006G096000 [exp]	11.74	0.8443
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125050 [exp]	12.04	0.7876

Compare expression of checked genes

Potri.011G167700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.