Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	UBC.8
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64230 295 / 1e-104 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G41700 293 / 4e-104 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT4G27960 291 / 6e-103 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT5G53300 290 / 1e-102 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT3G08690 290 / 2e-102 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT5G56150 288 / 6e-102 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT2G16740 270 / 6e-95 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT3G08700 251 / 2e-87 UBC12 ubiquitin-conjugating enzyme 12 (.1) AT3G13550 167 / 8e-54 EMB144, COP10, CIN4, FUS9 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2) AT1G78870 151 / 9e-48 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G471200 [exp] 304 / 4e-108 AT1G64230 292 / 2e-103 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G131400 [exp] 296 / 3e-105 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.003G136200 [exp] 296 / 4e-105 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.016G138900 [exp] 295 / 2e-104 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 294 / 2e-104 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.001G094900 [exp] 293 / 6e-104 AT1G64230 302 / 2e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.015G023300 [exp] 292 / 2e-103 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.012G033000 [exp] 292 / 2e-103 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.004G175000 [exp] 280 / 2e-98 AT5G53300 292 / 2e-103 ubiquitin-conjugating enzyme 10 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039323 [exp] 293 / 5e-104 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10027570 [exp] 293 / 5e-104 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014187 [exp] 292 / 2e-103 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10022726 [exp] 292 / 2e-103 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10038827 [exp] 292 / 2e-103 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014942 [exp] 292 / 2e-103 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10032352 [exp] 291 / 3e-103 AT5G53300 302 / 2e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10021385 [exp] 291 / 5e-103 AT1G64230 302 / 1e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10033937 [exp] 290 / 2e-102 AT5G53300 300 / 2e-106 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10009422 [exp] 285 / 1e-100 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [poplar] [flax] UBC PF00179 [poplar] [flax] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Potri.011G168200.7 pacid=42781371 polypeptide=Potri.011G168200.7.p locus=Potri.011G168200 ID=Potri.011G168200.7.v4.1 annot-version=v4.1 ATGGCTTCCAAGAGGATTAACAAGGAGTTGAAAGACCTGCAGAAGGACCCTCCTGCTTCATGCAGTGCTGGTCCTGTTGCTGATGATATGTTCCACTGGC AAGCAACAATTATGGGCCCAGCTGACAGCCCATTTACTGGTGGTGTATTCCTTGTGTCCATTCACTTTCCTCCAGATTACCCATTCAAGCCACCCAAGGT CTCCTTCCGTACAAAGGTTTTCCACCCTAACATCAACAGCAATGGAAGCATTTGTCTTGACATTCTCAAAGAGCAGTGGAGCCCTGCCCTTACAATATCC AAGGTTCTTCTGTCTATCTGCTCACTGCTGACTGATCCAAACCCGGATGATCCCCTGGTGCCTGAAATTGCTCACATGTACAAGACAGACAGAGCCAAGT ATGAAACTACTGCACGGTCCTGGACCCAGAAATATGCCATGGGCTAG
AA sequence Show only first row Show all	>Potri.011G168200.7 pacid=42781371 polypeptide=Potri.011G168200.7.p locus=Potri.011G168200 ID=Potri.011G168200.7.v4.1 annot-version=v4.1 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPADSPFTGGVFLVSIHFPPDYPFKPPKVSFRTKVFHPNINSNGSICLDILKEQWSPALTIS KVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Potri.011G168200 [exp]	0	1	UBC.8
AT1G31340		NEDD8, ATRUB1, ...	ARABIDOPSIS THALIANA RELATED T...		Potri.005G198700 [exp]	2.44	0.8748	SUBI.4
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.006G270300 [exp]	9.79	0.8710
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Potri.006G041900 [exp]	10.58	0.8352
AT5G01540		LECRKA4.1	lectin receptor kinase a4.1 (....		Potri.016G123501 [exp]	11.48	0.8811
AT5G38260			Protein kinase superfamily pro...		Potri.007G125450 [exp]	13.03	0.8821
AT3G48030			hypoxia-responsive family prot...		Potri.012G078000 [exp]	19.77	0.8596
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.006G087200 [exp]	23.15	0.8780	Pt-DFR1.3
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Potri.012G090000 [exp]	25.51	0.8719	CYP71AP2v1
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052600 [exp]	28.80	0.8755
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.013G056500 [exp]	29.94	0.8784

Compare expression of checked genes

Potri.011G168200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.