Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55690 710 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT5G56160 517 / 3e-178 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39170 440 / 1e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21520 437 / 3e-146 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 407 / 1e-134 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 406 / 2e-134 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39180 362 / 7e-118 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21540 361 / 1e-117 ATSFH3 SEC14-like 3 (.1.2.3) AT3G24840 348 / 3e-112 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G36490 344 / 2e-111 ATSFH12 SEC14-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G471300 [exp] 994 / 0 AT1G55690 714 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.004G157700 [exp] 454 / 5e-153 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119500 [exp] 450 / 3e-151 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G243000 [exp] 450 / 5e-151 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.002G032600 [exp] 424 / 3e-141 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 419 / 3e-139 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119400 [exp] 372 / 2e-121 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.004G157600 [exp] 370 / 7e-121 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.005G119700 [exp] 362 / 6e-118 AT4G36490 726 / 0.0 SEC14-like 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008360 [exp] 646 / 0 AT1G55690 668 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10022790 [exp] 434 / 2e-145 AT3G24840 650 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10023546 [exp] 422 / 2e-140 AT2G21520 924 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10042302 [exp] 419 / 7e-139 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026356 [exp] 407 / 1e-133 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040431 [exp] 400 / 8e-132 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10011853 [exp] 379 / 1e-124 AT3G24840 576 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10038176 [exp] 359 / 1e-116 AT3G24840 551 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10023547 [exp] 349 / 9e-113 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3) Lus10040432 [exp] 350 / 2e-112 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.011G168300.3 pacid=42781322 polypeptide=Potri.011G168300.3.p locus=Potri.011G168300 ID=Potri.011G168300.3.v4.1 annot-version=v4.1 ATGTCAAGTGTCGAGGGAATTGTGGTTAATGATGAATATAGAGAGAGAAGATCTGATTTTGAGAACTCTGAAGATGAAAGACGGCGGTCAAAAATTGGTA ATCTCAAGAAAAAGGCTCTGAATGCTTCGAATAAGTTCACCCATTCTCTTAAGAAAAGAGGGAAAAGGAAAATAGATTATAGGGTTTCTTCAGTTTCCAT AGAAGACGTGAGGGATGCAAAAGAGGAGAGTGCTGTCCATGATTTGCGCCAAAAGCTTCTCGAAAGGGATTTGTTGCCTCCCAGGCATGATGATTATCAT GCTTTGTTAAGATTTCTGAAAGCTAGAGAGTTTAACATTGATAAAACAATCCAGATGTGGGAAGAAATGCTTAACTGGAGAAAAGAATACGGGACAGACA CAATTTTAGAGGATTTTGAGTTTGAAGAGCTGGAGGAAGTCTTGCAATATTATCCTCAAGGTTACCATGGAGTTGATAAGGAAGGGCGGCCAGTTTACAT TGAGAGGCTTGGGAAAGCTTATCCGAGCAGGCTAATGCGTATCACCACTATAGAGCGGTATTTGAAGTACCATGTCCAAGAGTTTGAGAGGGCCATACAG GAGAAATTCCCTGCCTGTTCTATTGCTGCAAAGAGATGGATATGTTCGACGACAACCATATTAGATGTGCAAGGTTTGGGCATTAAGAATTTTACTCGGA CTGCTGCAACTCTTTTGGCTTCCATAACGAAGATAGATAACAGTTACTACCCCGAGACATTGCATCGGATGTTTGTTGTTAATGCTGGTCCAGGCTTTAA GAAGATGCTCTGGCCAGCAGCACAGAAGTTTCTGGATGCAAAGACTATTGCAAAGATACAGGTTTTGGAGCCCAAATCCCTGCCTAAGCTCCTGGAAGTT ATTGACTCAAGTCAATTGCCAGACTTCTTGGGTGGTTCTTGCTCTTGCTCGGCTGAAGGAGGGTGCCTTAGATCCAATAAAGGTCCATGGAATGATCCTG GAATAATGAAGCTTGTACATAATGCAGTACCAGCTGTTGTGAGGGAAATCTCCAGAGTGTCTAATGATATGCAGGAATTTGACTCATACAATCAGGTATG CCCTCTGAAGGGAAAAAGCAGTGATAAATTAACAGCAAAATCAGGGTCAGATATTGATGATCATTCTTCTCCATTTGGACCAAGGAGTTCTACATGTGCA TGCTTGGCCCCAGTTGATGAAGAGGTGAGGGCATCCGATCCAAGTATCTTCTACAGTTGTGATGACAATTTTATTCTGGCTGAGAAAACTGTTCATAGAG GGGGGTGTTCCGAGGATCAATCACTTGGAATCAACAATTTGGGGAACATTCCCTTTCAAGTGACATCAAATCTGGAAGGTTTATTCATCCGTTGGTTTGA CATTGTCAAGGAAAAGGTTGGGAAAACAAGTATCCCAAGCACAGCAAGAACCCTGATATCTTTCGTGGTCAAACTTTTTCGTAGTTTTCCATTAGAGTAT TTGAGAAGGCAGAGCAACATTTATCCATCTAATTTGATGGAACACAACACGGTTATCCATTCAACTGCTCTTGAAGCTGTGAAGGAAGAAGATCATGTAC GTCCATGTATAGAACGTCTTCAAAGACTAGAGAAAATATTTGAGGAAGTTAGCAACAAACCTGCTGGAATCCCTTTGGAAAAGGAGAAAATGCTAACAGA ATCTCTGGAGAGGATCAAGTCTGTGGAGTTTGATCTTGAGAAAACAAAGAGAGTACTGCATACTACAGTGGTAAAGCAACTTGAGATCACTGAGCTGCTA GACAATCTACGGGAGTCTAAATGTCGTCAAAGAAGATTGTTCTGCTGA
AA sequence Show only first row Show all	>Potri.011G168300.3 pacid=42781322 polypeptide=Potri.011G168300.3.p locus=Potri.011G168300 ID=Potri.011G168300.3.v4.1 annot-version=v4.1 MSSVEGIVVNDEYRERRSDFENSEDERRRSKIGNLKKKALNASNKFTHSLKKRGKRKIDYRVSSVSIEDVRDAKEESAVHDLRQKLLERDLLPPRHDDYH ALLRFLKAREFNIDKTIQMWEEMLNWRKEYGTDTILEDFEFEELEEVLQYYPQGYHGVDKEGRPVYIERLGKAYPSRLMRITTIERYLKYHVQEFERAIQ EKFPACSIAAKRWICSTTTILDVQGLGIKNFTRTAATLLASITKIDNSYYPETLHRMFVVNAGPGFKKMLWPAAQKFLDAKTIAKIQVLEPKSLPKLLEV IDSSQLPDFLGGSCSCSAEGGCLRSNKGPWNDPGIMKLVHNAVPAVVREISRVSNDMQEFDSYNQVCPLKGKSSDKLTAKSGSDIDDHSSPFGPRSSTCA CLAPVDEEVRASDPSIFYSCDDNFILAEKTVHRGGCSEDQSLGINNLGNIPFQVTSNLEGLFIRWFDIVKEKVGKTSIPSTARTLISFVVKLFRSFPLEY LRRQSNIYPSNLMEHNTVIHSTALEAVKEEDHVRPCIERLQRLEKIFEEVSNKPAGIPLEKEKMLTESLERIKSVEFDLEKTKRVLHTTVVKQLEITELL DNLRESKCRQRRLFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55690			Sec14p-like phosphatidylinosit...		Potri.011G168300 [exp]	0	1
AT5G20190			Tetratricopeptide repeat (TPR)...		Potri.018G130300 [exp]	6.32	0.6867
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.001G442600 [exp]	6.92	0.6837
AT1G10790			unknown protein		Potri.001G210600 [exp]	16.97	0.6936
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.013G031700 [exp]	25.03	0.6135	Pt-NHX2.2
AT2G43190			ribonuclease P family protein ...		Potri.001G033900 [exp]	26.05	0.6564
AT2G28390			SAND family protein (.1)		Potri.004G211200 [exp]	26.07	0.6739
AT5G56460			Protein kinase superfamily pro...		Potri.003G222600 [exp]	48.78	0.5754
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Potri.008G181000 [exp]	52.42	0.6383
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.009G061000 [exp]	57.34	0.6095
AT4G27500		PPI1	proton pump interactor 1 (.1)		Potri.001G399400 [exp]	58.58	0.5848	Pt-PPI1.4

Compare expression of checked genes

Potri.011G168300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.