Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39230 447 / 4e-159 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 406 / 9e-143 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75280 402 / 3e-141 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 396 / 9e-139 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 353 / 7e-122 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 275 / 3e-91 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 240 / 2e-77 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 231 / 8e-74 ATPRR2 pinoresinol reductase 2 (.1) AT5G18660 44 / 0.0002 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118100 [exp] 494 / 1e-177 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 465 / 6e-166 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 456 / 2e-162 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 412 / 3e-145 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 409 / 7e-144 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.004G156650 [exp] 306 / 7e-105 AT4G39230 322 / 1e-111 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 287 / 5e-96 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G123700 [exp] 274 / 1e-90 AT1G75280 284 / 4e-95 NmrA-like negative transcriptional regulator family protein (.1) Potri.001G133200 [exp] 263 / 1e-86 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026350 [exp] 452 / 6e-161 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 438 / 2e-155 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 434 / 1e-153 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 414 / 4e-146 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 407 / 3e-143 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 412 / 4e-143 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 335 / 2e-115 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10023558 [exp] 296 / 2e-99 AT4G34540 405 / 7e-143 NmrA-like negative transcriptional regulator family protein (.1) Lus10012147 [exp] 248 / 2e-80 AT1G32100 383 / 1e-133 pinoresinol reductase 1 (.1) Lus10012145 [exp] 245 / 2e-79 AT1G32100 419 / 2e-148 pinoresinol reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family CL0063 [poplar] [flax] NADP_Rossmann PF05368 [poplar] [flax] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Potri.011G168400.2 pacid=42781519 polypeptide=Potri.011G168400.2.p locus=Potri.011G168400 ID=Potri.011G168400.2.v4.1 annot-version=v4.1 ATGGCAGAGATCAGAAGCAGGATTCTGTTCATAGGAGGCACAGGATACATTGGAAAATTCATTGTAGAAGCAAGTGTCAAGGCAGGCCACCCAACTTTTG TTCTCGTCAGAGAGTCCACTCTCTCTAGCCCTGCTAAATCCACTGTCATTAACAACTTCAAGAATCTTGGTGTCAATTTCCTCCTGGGAGACTTGTCTGA TCATGAGAGTTTGGTGAAGGCAATTAAGCAAGTGGATGTTGTGATATCTACCATTGCTCACGATCAGTTATATAATCAAGACAAGATCATCGCGGCCATT AAAGAAGCTGGAAATATTAAGAGATTTTTCCCATCAGAGTTTGGAAATGATGTGGATATAGCGCATGCTGTTGAACCTGCAAAGACAGGATTCGCTACAA AGGCTAAAATTCGACGAGCTATTGAGGCTGAAGGAATTCCATACACTTATGTGGCATCAAACTCTTTTTCTGGTTTCTTTCTTCCAGCTTTGAACCACTC TAGGTCTGGGGGTTTGTGGCTGTATCTCCATGCACATGTCCAGGCTTCAACTTCAAGCATTGGTAGCAATGCAGAAACGACAACATTGAAACAACCTGGA GCTCCTGCCTCACCTAGAGATAAAGTTGTCATTTTGGGTGATGGAGATACCAAAGTGGTTTTCAACAAGGAAGATGATATTGCCACATATACTATCAAAG CGGTGGATGATCCAAGAGCAGTGAACAAAACCCTCTTCATTAAACCCCCATCCAACATCATCTCATCCAATGATCTTGTTTCTTTGTGGGAGAAGAAGAT AGGGAAAAAAATTGAACGGATCTATGTTCACGAGGAGCAACTTCTGAAGAATATTCAAGAAGCTTCAGGTCCACGCAAAGTGATTTTATCGATTTGTCAC TCTTTGTTTGTGAAAGGAGATCAGACCAACTTCGAGATTGAGCCATCGTTTGGTGTAGAGGCTTCTGAGCTTTATCCTGATGTCAAATACACTACTGTAG CTGAATACCTTAACCAGCTTTTTTGA
AA sequence Show only first row Show all	>Potri.011G168400.2 pacid=42781519 polypeptide=Potri.011G168400.2.p locus=Potri.011G168400 ID=Potri.011G168400.2.v4.1 annot-version=v4.1 MAEIRSRILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSSPAKSTVINNFKNLGVNFLLGDLSDHESLVKAIKQVDVVISTIAHDQLYNQDKIIAAI KEAGNIKRFFPSEFGNDVDIAHAVEPAKTGFATKAKIRRAIEAEGIPYTYVASNSFSGFFLPALNHSRSGGLWLYLHAHVQASTSSIGSNAETTTLKQPG APASPRDKVVILGDGDTKVVFNKEDDIATYTIKAVDDPRAVNKTLFIKPPSNIISSNDLVSLWEKKIGKKIERIYVHEEQLLKNIQEASGPRKVILSICH SLFVKGDQTNFEIEPSFGVEASELYPDVKYTTVAEYLNQLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39230			NmrA-like negative transcripti...		Potri.011G168400 [exp]	0	1
					Potri.003G108301 [exp]	2.23	0.9892
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G220000 [exp]	9.21	0.9919
AT3G25730	AP2_ERF	EDF3	ethylene response DNA binding ...		Potri.003G010763 [exp]	15.00	0.9874
AT1G68840	AP2_ERF	EDF2, RAV2, RAP...	TEMPRANILLO 2, RELATED TO AP2 ...		Potri.003G010700 [exp]	18.49	0.9895
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.004G219450 [exp]	20.19	0.9892
					Potri.011G005500 [exp]	28.61	0.9886
					Potri.006G261111 [exp]	30.85	0.9882
					Potri.003G010598 [exp]	31.78	0.9879
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Potri.006G055600 [exp]	39.49	0.9875	Pt-ZOG1.15
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.001G112600 [exp]	39.79	0.9600

Compare expression of checked genes

Potri.011G168400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.