Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13350 307 / 3e-104 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G04880 242 / 6e-77 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G55650 232 / 3e-74 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G76110 223 / 6e-71 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G20910 55 / 2e-08 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055200 [exp] 258 / 7e-83 AT1G04880 364 / 3e-122 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.001G315200 [exp] 253 / 1e-81 AT1G04880 376 / 6e-128 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.005G246700 [exp] 217 / 8e-69 AT1G76110 350 / 2e-120 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.011G145450 [exp] 49 / 2e-06 AT2G17410 423 / 3e-140 ARID/BRIGHT DNA-binding domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016671 [exp] 242 / 9e-77 AT1G04880 365 / 5e-123 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10007127 [exp] 242 / 1e-76 AT1G04880 376 / 3e-127 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10021228 [exp] 215 / 1e-67 AT1G76110 375 / 4e-130 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10005636 [exp] 150 / 6e-43 AT1G76110 273 / 2e-90 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10001140 [exp] 44 / 0.0001 AT5G52890 113 / 2e-27 AT hook motif-containing protein (.1.2) Lus10002064 [exp] 44 / 0.0002 AT5G52890 114 / 4e-28 AT hook motif-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01388 [poplar] [flax] ARID ARID/BRIGHT DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.011G168800.1 pacid=42780749 polypeptide=Potri.011G168800.1.p locus=Potri.011G168800 ID=Potri.011G168800.1.v4.1 annot-version=v4.1 ATGTCTACCCTTGACCCAACTGCTACAGTTATTTCACCTCAGCAACAAGAATTACACAGTGAGAGCATAAATGGCCAATCTTTCAGGTCCTATCCTCCAG CTACAGCCAAGTATGAAGATATTGCTCAAAGTTCAGACCTTTTTTGGGAAAAGCTCAAAGCTTTTCATCAATCCTTTGGCACCAAATTCATGGTTCCTAC TGTGGGAGGAAAGGCTCTTGATCTTCACCATCTTTTTGTGGAGGTCACATCTCGTGGTGGCATTGAGAAGGTCATTACAGATCGTAAATGGAAGGAAGTG ATTACAGCCTTCAATTTCCCAACTACAATTACCAGTGCATCATTTGTCTTAAGGAAGCATTATCTATCATTACTCTATCATTTCGAGCAGGTTTACCACT TCAACAAACAAATTCCTTTAGTTTCAGGGACTGATGCAATGAATGGGAGGAGCCTTGTTAATGGATCTGCAACCCTAGAAGAAGGTGCCATTACAAACCA GTTTTCTAGTAGTCAACAATTGCAGATTGGTTGTTCAGTGAGTGGAATCATTGATGGCAAATTTGATAATGGATATCTGGTTACTGTGAACCTGGGCACT AATCAGCTTAAAGGTGTCCTATACCATATTCCTCATACATTTCACGAGTCTCAGGATTCTCGTTCTTCGGATTTGCCTCCTCGCCGGCGCCGGAAGAGAT CGCGGTTAGCCTTACGTGATCCCTCTCAGCCCAAGTCCAACAGGAGTGGCTACAATTTTTTCTTTACTGAGCATTATGCCCAGCTAAAGCCCCTACACCA TGGGCAAGAGAAAGTCATTAGCAAGAAGATTGGACTCTTATGGAACAACCTCACGGAGGCAGAAAAGCAGGTTTATCAGGAGAAAGGTTTGAGGGACAAG GAAAAATACAGGAATGAAATGTTGGAGTACAGATCTTCATATGCTCAATAG
AA sequence Show only first row Show all	>Potri.011G168800.1 pacid=42780749 polypeptide=Potri.011G168800.1.p locus=Potri.011G168800 ID=Potri.011G168800.1.v4.1 annot-version=v4.1 MSTLDPTATVISPQQQELHSESINGQSFRSYPPATAKYEDIAQSSDLFWEKLKAFHQSFGTKFMVPTVGGKALDLHHLFVEVTSRGGIEKVITDRKWKEV ITAFNFPTTITSASFVLRKHYLSLLYHFEQVYHFNKQIPLVSGTDAMNGRSLVNGSATLEEGAITNQFSSSQQLQIGCSVSGIIDGKFDNGYLVTVNLGT NQLKGVLYHIPHTFHESQDSRSSDLPPRRRRKRSRLALRDPSQPKSNRSGYNFFFTEHYAQLKPLHHGQEKVISKKIGLLWNNLTEAEKQVYQEKGLRDK EKYRNEMLEYRSSYAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13350	ARID		HMG (high mobility group) box ...		Potri.011G168800 [exp]	0	1
AT1G16445			S-adenosyl-L-methionine-depend...		Potri.007G069400 [exp]	1.00	0.8843
AT5G06770	C3HZnF		KH domain-containing protein /...		Potri.016G046600 [exp]	2.44	0.8489
AT1G57540			unknown protein		Potri.005G002900 [exp]	4.24	0.8408
AT5G20220			zinc knuckle (CCHC-type) famil...		Potri.010G092600 [exp]	4.58	0.8175
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.016G034875 [exp]	5.29	0.7845
AT1G05785			Got1/Sft2-like vescicle transp...		Potri.014G151000 [exp]	6.92	0.8228
AT5G57060			unknown protein		Potri.003G044400 [exp]	7.41	0.8281
AT3G18140			Transducin/WD40 repeat-like su...		Potri.016G052800 [exp]	8.24	0.8398
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Potri.003G015700 [exp]	9.48	0.8100	Pt-TH1.1
AT4G13520		SMAP1	small acidic protein 1 (.1)		Potri.010G063100 [exp]	10.39	0.7796

Compare expression of checked genes

Potri.011G168800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.