Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28200 65 / 1e-11 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G60580 63 / 5e-11 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G61470 61 / 2e-10 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G53600 58 / 5e-10 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G56200 61 / 6e-10 C2H2ZnF C2H2 type zinc finger transcription factor family (.1) AT5G03510 59 / 7e-10 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G49930 58 / 9e-10 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G04390 59 / 1e-09 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G45120 57 / 5e-09 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G37430 55 / 7e-09 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G235800 [exp] 64 / 9e-12 AT2G37430 133 / 2e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.009G027700 [exp] 57 / 1e-09 AT5G59820 126 / 5e-37 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) Potri.010G209400 [exp] 56 / 3e-09 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1) Potri.006G121600 [exp] 56 / 7e-09 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.008G051200 [exp] 54 / 1e-08 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1) Potri.009G004800 [exp] 55 / 2e-08 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.001G125900 [exp] 55 / 2e-08 AT3G60580 98 / 1e-23 C2H2-like zinc finger protein (.1) Potri.004G118100 [exp] 54 / 5e-08 AT3G49930 80 / 9e-17 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G229400 [exp] 53 / 1e-07 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022610 [exp] 64 / 1e-11 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10030330 [exp] 59 / 5e-10 AT2G37430 125 / 2e-36 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10015888 [exp] 59 / 9e-10 AT3G60580 126 / 3e-35 C2H2-like zinc finger protein (.1) Lus10023912 [exp] 57 / 4e-09 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10038929 [exp] 57 / 4e-09 AT1G02030 101 / 2e-25 C2H2-like zinc finger protein (.1) Lus10031166 [exp] 56 / 8e-09 AT1G02030 72 / 1e-14 C2H2-like zinc finger protein (.1) Lus10024428 [exp] 54 / 2e-08 AT2G37430 157 / 4e-49 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10040312 [exp] 54 / 2e-08 AT2G37430 112 / 8e-32 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10040425 [exp] 54 / 2e-08 AT5G04390 159 / 5e-48 C2H2-type zinc finger family protein (.1) Lus10021409 [exp] 54 / 6e-08 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF13912 [poplar] [flax] zf-C2H2_6 C2H2-type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.011G168900.1 pacid=42780799 polypeptide=Potri.011G168900.1.p locus=Potri.011G168900 ID=Potri.011G168900.1.v4.1 annot-version=v4.1 ATGTCTAAATCGTGCACAGTTTGCAACAAAGTGTTTCCTAGTGGAAAATCATGGGGAGGCCATATAAGGGCATGTTACAAGAAGGAGGAAGACGAAAAGG ATCGAGAAGATACTGATGATTGGAGGGTACATGATTGCTCTTCTTCAGAATCAGAATCAGAGTTTGAATTTCATGTTGATGTTGATGAGAGTAGTACTAA AGGGTCCGTGGAGCCCGTCGATTTGAGGGAGTATCTCCCACGGGGTTGGTCAGGAAATAGCAAGAAGAAAAGATCTAGAAAAAATAAGCTCAAATTTGCT GCTTTAAATCAAGCCAGAAAGAAAAGTTTTGCAGATCACATTCTTGAAGCTGCAGCCTTAAACCTTCTACTGTGTTCTTCAGTCTGTGATAGCAAACAGA AGGGTATTAGAGAAGAATTAGCCAAGTACCAAGATAGGTTTGCTCATCAACTTGCCTTGAATAAGAAGCCAATGAAAAGCATTGCTTATACGCGAGAAAA GAGGCCCTCAGAGTTCAAAGTGGGACATGAAAGAACATACGTGTGCAGGGAATGTGGATTAGTTTTTGACAGCTTCCAAGGTCTCGGCGGCCACCTGGCC GCCCACAATAGGAAGAGAGAGAGGGAAAAAGAAGGGAAATTGGATCTGGTAAGTGGGGTTCATCAAGATTCGAGAGGCAAAAACGTTATAATTGGTGATG CTCCTAGAAAAGAGTACAAGTGTAACCTGTGCGAAAGAAGTTTTCCAAGTGGACAAGCTCTCGGCGGACATATGAGCTATCATGGCACTGCTCATAAGGT TTACAAGCATGAAGGACATAATAGCCATCACACCACTGCTGATACGGAAAATAATAACTCCGCATCCAGCTATGAGGCATCGAATGGGGCAGATAGTCAT TCCAATCCTCAATCTAGTGTACAAGTTAGTCACCTTGATCCTCAACCTGGTAGTGCATTGGATTTAAACATGGCTCCAGATGAGGGTGTATGGGGAAATG ATGTTGGAGTCCAAAAAAATCTCAGTTAA
AA sequence Show only first row Show all	>Potri.011G168900.1 pacid=42780799 polypeptide=Potri.011G168900.1.p locus=Potri.011G168900 ID=Potri.011G168900.1.v4.1 annot-version=v4.1 MSKSCTVCNKVFPSGKSWGGHIRACYKKEEDEKDREDTDDWRVHDCSSSESESEFEFHVDVDESSTKGSVEPVDLREYLPRGWSGNSKKKRSRKNKLKFA ALNQARKKSFADHILEAAALNLLLCSSVCDSKQKGIREELAKYQDRFAHQLALNKKPMKSIAYTREKRPSEFKVGHERTYVCRECGLVFDSFQGLGGHLA AHNRKREREKEGKLDLVSGVHQDSRGKNVIIGDAPRKEYKCNLCERSFPSGQALGGHMSYHGTAHKVYKHEGHNSHHTTADTENNNSASSYEASNGADSH SNPQSSVQVSHLDPQPGSALDLNMAPDEGVWGNDVGVQKNLS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.011G168900 [exp]	0	1
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.002G263600 [exp]	2.23	0.8644
AT1G35710			Protein kinase family protein ...		Potri.019G129100 [exp]	3.00	0.8849
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.009G133600 [exp]	4.89	0.8608
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182321 [exp]	4.89	0.8669
AT1G55230			Family of unknown function (DU...		Potri.003G216500 [exp]	7.93	0.8588
AT1G13130			Cellulase (glycosyl hydrolase ...		Potri.008G183400 [exp]	8.48	0.8569
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182000 [exp]	8.48	0.8548
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025601 [exp]	9.16	0.8403
					Potri.017G152701 [exp]	9.94	0.8481
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025500 [exp]	10.24	0.8399

Compare expression of checked genes

Potri.011G168900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.