Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56210 181 / 1e-49 WIP2 WPP domain interacting protein 2 (.1) AT4G26455 163 / 1e-43 WIP1 WPP domain interacting protein 1 (.1) AT3G13360 119 / 1e-28 WIP3 WPP domain interacting protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G472000 [exp] 813 / 0 AT4G26455 194 / 1e-54 WPP domain interacting protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008336 [exp] 243 / 4e-72 AT4G26455 142 / 2e-36 WPP domain interacting protein 1 (.1) Lus10027087 [exp] 230 / 4e-67 AT4G26455 140 / 1e-35 WPP domain interacting protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G169000.4 pacid=42782449 polypeptide=Potri.011G169000.4.p locus=Potri.011G169000 ID=Potri.011G169000.4.v4.1 annot-version=v4.1 ATGGATTTGGAGAGTGAAAGTTGTGCACTTGAATCTGTTGAAGATAATGAATTGACCACCACCACCATCACAACCACAACCCCTGATGGTGCTTTAAGTC ATAGAGATGGTGATGATGATGGTAACAGTAAGATTAAGGCTAATGGACCATGTTCAAATGGGATAATTCATGAAACGGGCACTAGTGGTAATGGCGATGA GAATACGATGCCTCACGATGGAGAAGTTCAGGGAGGTGTGGGAATTGAGCCAGTGGGGAATTCAGTGGATTCACTTCCTTTAATGGCCAATTCTCCGACC ATGGGGTCACCTCCTAATATGAAAGGATTTGGCTTAAAGAAATGGAGGCGAATTAGGAGAGATATTATTAAGGATGCTAGTGCTGGTGTGGATAACAGTA AAGTTTTGAAACGAGTATCCTCTGGTGCTGTGAATCCAGCTAAACCAACAAATTTAACACTGGTTGAGGTCATGCAAAATAGTGAGGGTTCTGTTGGCTC TGCTAATTTATTTAGAAATGCGGCTCTTGGTGATGGGTTTGTGACCCACGGGTCTAATTTGGAATATAGATTTACGGTTGCATCTGCTTTCTCAGCTGGC ACGGATTCTGAGAATAGTGAGGATCAGAGTAGCAGGTCCTCAACAGCAGCTAGTGCTCCAAGGGTGAGGCATGACCTGCTTTCAGTGTCAGGGTATGCAT GGGACAAGAATGGGGTGAAGTATTTGGGTGGGAAGAGTGGGGGTAGTTCAGCTCAACGGGTTCAACGAGGGATGGGATGGGTGGAAAACAGTAAGAAGCC TAGAGGAGAAAGGGTCAAAATCGAGAAGGAAAACTCTCATTCCAGCATGGAATCTGACTCAAGAAGCTCCAACTTTGTCTTTGTGCAGGGTGATTTCTCT GTGACCAGTAACGGAAAGCAAAGTGGAAGGTCAATGAATTATGATGGAGAAAACAGTGATGAAGCTCATGCAGTTGAACAACAATTTAGTGGGGGAGTCC ATACTAGTTATGGGCAGGAGAATGTTGGAGAAGTTGAAGATCTTTCAGAAAATGAATTAGCTGCAGAAGCATCTTGGACAGATAAGGGAGAAAAAAGTGA TAATCACCAACCCTCAGCAGATCAGGATCCATTTGTTGAATCTATACTTTCTCTCCAATCTGTGCAGAAAGCTCTTGAAAATGAGGTTAAAAAATTGGGG GAGATCGGGAAAGTTAGCAGTGTAGTGGAAGATTCCTCTTCAGCTAATCCAGAAATCCAGAAATCGAGCTTACCTAACCAGTTTGATTCTGAAAGTATCA AAGAATCAAATTCCTTGGAGTTCCGAGTATTAAGCTTAACGCAGACTGTACAGTACTTGGAGAGCAGACTGGAGGAGGCAAAGGCTATGATCAAGGTGAA GGAGTTGAGGGTTGCTGAACTGGAAGCCACCTTGAATGGTGACAGGTCACCAAAAGAAGAATCAGCGAGTACTACAGAGTTGCAGCAAGAGAAATATAGA GAGATTGAGAACGAGCTGGAGGGACTATTCAAGCAAAAGATCGAGGCTGAGATCGAGCATTTAGCGCTAGCGAGTCTACAGAAGTTGGGAGTTGCTGCAG GTGATCAAATCACCCTATTTGAGGAACAAGAGGCTTTGGCTGGTGAGCAAGTGCAGATGCTGAATAAGCTAGGAGAAGCTGGGAATAAGGCTGCATCTTT AAAGAAACAAGCGGAGGAGTTGGAAAAATACTGTGGGGATGTTTTAGGGACTGAAGAGGTGTTTAAGATGCAGAACAAAGTATGTAAGGTAGCTGCATGT TTTCTCATTCAGTTGATTTTGCTCATCTTGGTTTTTTGGCTTTTAGTGCTGCAGTTATCGCCCTATTGTGGGGTGGTTGTACCCACTTAA
AA sequence Show only first row Show all	>Potri.011G169000.4 pacid=42782449 polypeptide=Potri.011G169000.4.p locus=Potri.011G169000 ID=Potri.011G169000.4.v4.1 annot-version=v4.1 MDLESESCALESVEDNELTTTTITTTTPDGALSHRDGDDDGNSKIKANGPCSNGIIHETGTSGNGDENTMPHDGEVQGGVGIEPVGNSVDSLPLMANSPT MGSPPNMKGFGLKKWRRIRRDIIKDASAGVDNSKVLKRVSSGAVNPAKPTNLTLVEVMQNSEGSVGSANLFRNAALGDGFVTHGSNLEYRFTVASAFSAG TDSENSEDQSSRSSTAASAPRVRHDLLSVSGYAWDKNGVKYLGGKSGGSSAQRVQRGMGWVENSKKPRGERVKIEKENSHSSMESDSRSSNFVFVQGDFS VTSNGKQSGRSMNYDGENSDEAHAVEQQFSGGVHTSYGQENVGEVEDLSENELAAEASWTDKGEKSDNHQPSADQDPFVESILSLQSVQKALENEVKKLG EIGKVSSVVEDSSSANPEIQKSSLPNQFDSESIKESNSLEFRVLSLTQTVQYLESRLEEAKAMIKVKELRVAELEATLNGDRSPKEESASTTELQQEKYR EIENELEGLFKQKIEAEIEHLALASLQKLGVAAGDQITLFEEQEALAGEQVQMLNKLGEAGNKAASLKKQAEELEKYCGDVLGTEEVFKMQNKVCKVAAC FLIQLILLILVFWLLVLQLSPYCGVVVPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56210		WIP2	WPP domain interacting protein...		Potri.011G169000 [exp]	0	1
AT1G61040		VIP5	vernalization independence 5, ...		Potri.004G039500 [exp]	1.00	0.8894
AT3G60850			unknown protein		Potri.014G070200 [exp]	3.16	0.8706
AT5G41950			Tetratricopeptide repeat (TPR)...		Potri.011G050600 [exp]	8.66	0.8155
AT3G58630	Trihelix		sequence-specific DNA binding ...		Potri.001G113600 [exp]	9.16	0.8169
AT3G50910			unknown protein		Potri.005G120600 [exp]	12.24	0.8584
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.011G089901 [exp]	12.64	0.8517
AT5G66540			unknown protein		Potri.012G082600 [exp]	14.49	0.8420
AT5G28040	GeBP		DNA-binding storekeeper protei...		Potri.001G261700 [exp]	17.17	0.7911
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.018G086100 [exp]	18.00	0.8343
AT3G23880			F-box and associated interacti...		Potri.008G199800 [exp]	18.33	0.8399

Compare expression of checked genes

Potri.011G169000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.