Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56250 177 / 2e-45 HAP8 hapless 8 (.1.2) AT5G56240 173 / 1e-43 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G472400 [exp] 2126 / 0 AT5G56250 203 / 8e-54 hapless 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008344 [exp] 725 / 0 AT5G56240 175 / 3e-44 unknown protein Lus10000240 [exp] 374 / 7e-111 AT5G56240 121 / 9e-28 unknown protein Lus10027098 [exp] 340 / 1e-103 AT5G56250 172 / 4e-46 hapless 8 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G169100.2 pacid=42781551 polypeptide=Potri.011G169100.2.p locus=Potri.011G169100 ID=Potri.011G169100.2.v4.1 annot-version=v4.1 ATGTTTTCCATTGAAAACCCTCCAGTACCAGATCCCCCATGTTCTTCTTCTCAACCGAATAGTAGAAGTGATGAGAGGGCTTCTCAGCTTCCCACTAGTA GTACTTATAATAAGCTTCCACCTTCTAATTTGTCAGAGGTAGTAGTAGTAGATCTGCCAAACCCAAATCCAAACCCAAACCCATGTCTTGATAATCCTAC CCCACTTCCTAATTTCTCCATAAGAGATTATGTATTTAAAGCCAGGAGCAAGGATATCAAGAATAGCTGGCCTTTTTCTCAAAAAAATCTGCAACTTTGT TTGAAACATGGCGTTAAGGGCGTGTTGCCACAATTTGAGCCTCTTGATACTGTAAGAAACCAGTTCTTCAAGAGATTTAAGGGTGAAACCAATTCAGTTG AGAAGCAAAATATCAGCAAAAGAAGCAGTTTTGACAAGGAGGCTTCTAGACCAGAAAGTCATGTGGTGGTAGACTTATCTGATGATGCTCAATTGCATGC CAAGTTAGCAGAATCTTGTGTAGACATTAGTTCGTGTAGATATGGAGAAGAAAATGATTTCCCATCTACAGCAACAAGTGAGATAGACTCAGTTCCTGAT AGCAGGAAACCTAGATCACCTTTAGAAACTCGGACTTTGGCCAAAGCTGCAGTTGAAGTTGGAGCTACTGTGACCCACAAGACTGAAAGCACCACCAGGC CATTGGCTAATAAGAAGTGCAGGTTGATTGTGAAATTTGGTGGCAATTCTGATCGTGCCTCGGCTGAAGATATTGCTTCTAATTGTACAACTATATCAGA AACGATGGCTTCAAAACTTTGCCCTGTTTGCAAAACTTTCTCATCCTCGTCCAACACCACCTTGAATGCTCACATTGATCAGTGCCTTTCTGTGGAGTCA ACACCCAAGTGGACAGCTGATTCTAAGCTAACCAGGTATAGAATTAAGCCAAGGAAGACACGGTTGATGGTGGATATTTATACTACTGCTCAATATTGCA CATTGGAAGAGCTTGATCGAAGAAATGGTACAAGCTGGGCCACCATGTCAAGCTTGCCCGCTCAAGAGACTGAGAAGAGTGATGCACCTAAGGAAGGGAA AAAGCCAAGGGTGTTGCCAATTCATCCTGAGGATGCTGGTGATGTAGGGCCAGTTTATATAGATGCAAATGGCACCAAAGTTAGGATTCTATCTCAGTTT AATGATGCATCACCAGTAGCAGAAGTAAGCGAGGATGATGGAGCAAGAAGGGAGGATATTGGAGGAAAGAAATCTTTGAAAGGTGGCAAAGCAAGCAACT ACATTTCAATGAAAAAGAAAAAACGATTAGCACAAAAGCATCAGAAGTATCTAAAACTTGCTTCTCAGAGAAAAAAAGTCTTGTTCCACGAGGCACCTGG TTCTCAGATTTCTGGAGGTCGAGAAGAAGGTAATGGAGAGGAGAAGAGTTGCGAGAAAGATCATCAGATGTTGAGGCAAATCAAACCTAGTGATTGTGGG ACTTTAAGACCATGGGTTTGCTCCAAACGAAGGGGTTTTCCAAAGAAGATTGCAACACAAGAGAGTCATCAACTTGTGAGATGTAAATGGCACCTGGCTC AGGACTTGCTGGTTGAGAATGATCAATCATCTGTGGGTGATCATCTTTCAGAGAGGAGCCGCGCTCAGAAACCTACCATTTTGTGTGATGATCAAATATC TTCTCCCAGAAACAGTGAGAGGATGGAGAAGCTTTTTCATAAAGACCAGGTTAATGAGAGGAGGGAGTGGTCTCCTGGAAGAAAGACAGTAGGGAATCTT CTAGTGGGGGACAGGATTAGTGGGAAAGTGGATAAGTTGTTTCCACCAATGAAGCGTAATGCCAATCAGTTGAACAAAGATGGCACTTCTATCCATGATG GCTGTATGCTGAGACCACCAAACTCTCCCAGGAATGATGTTTCTTCACTAACCAAGAAGACTGTCTATACTGATGATGATACATGTAATAATTCTGATAT GTATCCCATTGCTAGCACAAAATCATCCCGGAGTTCTCATGCAGTTGTAACTAAAGCAATGAGATTCTCCTCCATTAGGAAAAGTGTACTGTCTGTCAGC AGCCAATCTTCTGTGACTGAATCCAGGCCCAGCAAAGGTAAGAGATGGTCCACCCTTGACAAATCTCAAGAGCCTTTGACAAGAGAAATAGATGAAGAAG CTGTGGGTAGGCATTCTGAGGTTGATGAACAGTATGATTTGATGCAGGATCATACAGAAAATCTACTTGAAAGAGAAGAAATGACTGATGAGGTGTCTCT TGGTGGAAGCCCCGTCCAGGAAGTTAGACAAGGAAAAAGATTTTCTTGCAGTTCTGAAAGGCTGGAAGCCTTGAATTTGAGGAGCTCAAAATCTGCACTT GGCTGTGGTCATGCTGAGGGAATAAATGTAGATTATTCAGGTAGAGGTGATGGCGATTATGTACACAAAGTTGATTCCCTAGAGTCTCCTGGAACACAAG TTCCAATCCATGAGGACATTGTTGTTGAACCATCTTCCAAGACTTTGGATGGGAGGAGGAGCGTTGCAGGTATGAGTAAATCTGTCAACACTGAATTTCA TGAGCTGGGTATTTGTTCAAAGGTCCAATCAAACTGCATTCGGTCTATTGAAGATTATGGAGGACTTTTAAGTCAAAACAACGTGTCAACTAGTCCAACT GGGCCTTTTATCCATGACCAAAGGATGTTTTCTGCTACTGAAGCTGGTAATGGCATGATGAGCCAAGATGCTGGTGATATGGGGGTGGGGTTGGATTCTG AAGCTGCGAAAGTAGATTCTTTTCCTGAGGTTGATCCCATTCCTATTCCTGGACCACCAGGGTCATTTTTGCCAAGTCCTAGAGATATGGGTTCTGAAGA TTTTCAAGGGAATTCATCATTGACTACTATCCGGGTTCACTCTTCACCAGACCAGCATGACATGATCGATGGTGATTCATCAGATTCCCCTCTATCTGCA GTATCGACCATCTCTAACTCCATGGTAGGTAGATCTGATTTCAGTTATTCAGAACCAGCATCATCAGCAGGACATTGTGTCTTTCAAGACAAGATTAGGT CAGGATTAATGTCTGCTGGAATTGAGCCGTTGGCACACAATGCTGGTGCAGTTCCGCAAGCAGCAACTAGAGGAGTGGAAAGAACCACTTTTTCTGGAGA GTACTTGAAACTTGATAGAATCTCTATTGAGAAAGAATCTTTTGGCTTCAAAAACGATCAGCCATGCTGTTGCCAAAGAAAGGAGAGATTTTCTGAGAAT GTTGCTCTAAATCACCAAGAATCACTGCTACTAAGGCGGCGGAAAATGGCATCAATGCCAGTTCCTTCCGAGGGGAAGCACATGGGTTGCAATTCAAACC TGACACCGATTAATTTGGATGTCAGCCCTGAATTAGTTCCCCTGAACAGCTACTCAGCTTCAGGATCTGAAAAGATGGTCCTCCCGCTCATCAAGCCCCC CACAGATTGTATTCCTTTGAAGGACTCTCCCAGTAGTGCTGGAGTGAGGTTCTTAGCTCGCGCGGATGCTGATTCTGCTAGTCCATCTGCCTCCAATCCT ATACTTAGGCTGATGGGGAAGAACTTAATGGTGGTCAACAAAGAAGATAATGTATCCATGCCAAATGGGCAGGTCCGACCTTGTGCTCAAAATGTCAATC AAACTTCTCACATTCCAACAATTTCTGCAGTCTCACCTGGCAATATTCAGAATCTGGACAGTCATTCATTTCATCCCATGACCCCTCAAGGTTCTGTCAT CTTTAGTCGGGATCCATACAAGACAGCGGTTCAACGTTTGGATGCTGGGTTTTCCGACAGTTTTGGAAGCCACACTGATTCTAAGCTATCACAAGCACCA TCAAAGTTACCAGCAGGCATGTTTTGTGACCAACATAGTGATGGTGGACTTGCACCATCTATTAAGCCTCATCAGTGCAAAGAGGATTACAATTTTTCAA GTTCACAGAACAGGCTAAAGAGAAGACTGGAAACTTTTCCCACATGCACTATGAAAAGAGCTACCGAAACTCCTGACCGCCATTGCAAGCGTGCTGATTC ATTCACTCATCCCGTAAAAGAAATCATCATCATTGATGATGTTCCTGAAAGTCAAACTGTTGTGATGAGTGACATTACAAAATACAATGAAGGCTGGAGG GAAAGACAAGTATTTCCATCAGGTATCTCGGTTCCAACTATCCCGATCTATAACATGACAAATGTGAATCCCTTCACTTGTTATCAGTCACAAGAGCACC CTCCAATTGGTGGAACACCAGTGGCGCACAATGGCAGCTTTCATGCATCCACCACCAGGCTAGTTAACACAAGTCCTGTTAGGTGGGGTTGTCCTCCAGA TGGTCCTGGCGCATTGCAAATGAATCCTTTTGTGGCCGCATCAAACTCATCTGGTCATCTAAGATCTGCATCGCTGTATTATTCTCCGAGCTTTTAA
AA sequence Show only first row Show all	>Potri.011G169100.2 pacid=42781551 polypeptide=Potri.011G169100.2.p locus=Potri.011G169100 ID=Potri.011G169100.2.v4.1 annot-version=v4.1 MFSIENPPVPDPPCSSSQPNSRSDERASQLPTSSTYNKLPPSNLSEVVVVDLPNPNPNPNPCLDNPTPLPNFSIRDYVFKARSKDIKNSWPFSQKNLQLC LKHGVKGVLPQFEPLDTVRNQFFKRFKGETNSVEKQNISKRSSFDKEASRPESHVVVDLSDDAQLHAKLAESCVDISSCRYGEENDFPSTATSEIDSVPD SRKPRSPLETRTLAKAAVEVGATVTHKTESTTRPLANKKCRLIVKFGGNSDRASAEDIASNCTTISETMASKLCPVCKTFSSSSNTTLNAHIDQCLSVES TPKWTADSKLTRYRIKPRKTRLMVDIYTTAQYCTLEELDRRNGTSWATMSSLPAQETEKSDAPKEGKKPRVLPIHPEDAGDVGPVYIDANGTKVRILSQF NDASPVAEVSEDDGARREDIGGKKSLKGGKASNYISMKKKKRLAQKHQKYLKLASQRKKVLFHEAPGSQISGGREEGNGEEKSCEKDHQMLRQIKPSDCG TLRPWVCSKRRGFPKKIATQESHQLVRCKWHLAQDLLVENDQSSVGDHLSERSRAQKPTILCDDQISSPRNSERMEKLFHKDQVNERREWSPGRKTVGNL LVGDRISGKVDKLFPPMKRNANQLNKDGTSIHDGCMLRPPNSPRNDVSSLTKKTVYTDDDTCNNSDMYPIASTKSSRSSHAVVTKAMRFSSIRKSVLSVS SQSSVTESRPSKGKRWSTLDKSQEPLTREIDEEAVGRHSEVDEQYDLMQDHTENLLEREEMTDEVSLGGSPVQEVRQGKRFSCSSERLEALNLRSSKSAL GCGHAEGINVDYSGRGDGDYVHKVDSLESPGTQVPIHEDIVVEPSSKTLDGRRSVAGMSKSVNTEFHELGICSKVQSNCIRSIEDYGGLLSQNNVSTSPT GPFIHDQRMFSATEAGNGMMSQDAGDMGVGLDSEAAKVDSFPEVDPIPIPGPPGSFLPSPRDMGSEDFQGNSSLTTIRVHSSPDQHDMIDGDSSDSPLSA VSTISNSMVGRSDFSYSEPASSAGHCVFQDKIRSGLMSAGIEPLAHNAGAVPQAATRGVERTTFSGEYLKLDRISIEKESFGFKNDQPCCCQRKERFSEN VALNHQESLLLRRRKMASMPVPSEGKHMGCNSNLTPINLDVSPELVPLNSYSASGSEKMVLPLIKPPTDCIPLKDSPSSAGVRFLARADADSASPSASNP ILRLMGKNLMVVNKEDNVSMPNGQVRPCAQNVNQTSHIPTISAVSPGNIQNLDSHSFHPMTPQGSVIFSRDPYKTAVQRLDAGFSDSFGSHTDSKLSQAP SKLPAGMFCDQHSDGGLAPSIKPHQCKEDYNFSSSQNRLKRRLETFPTCTMKRATETPDRHCKRADSFTHPVKEIIIIDDVPESQTVVMSDITKYNEGWR ERQVFPSGISVPTIPIYNMTNVNPFTCYQSQEHPPIGGTPVAHNGSFHASTTRLVNTSPVRWGCPPDGPGALQMNPFVAASNSSGHLRSASLYYSPSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56250		HAP8	hapless 8 (.1.2)		Potri.011G169100 [exp]	0	1
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Potri.012G034300 [exp]	5.29	0.8570
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.007G113300 [exp]	8.00	0.8699	HAF902
AT3G50370			unknown protein		Potri.005G137700 [exp]	9.00	0.8739
AT5G09950			Tetratricopeptide repeat (TPR)...		Potri.013G129500 [exp]	9.16	0.8749
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.017G047600 [exp]	11.40	0.8684
AT4G24680		MOS1	modifier of snc1 (.1)		Potri.015G079800 [exp]	14.07	0.8549
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.001G123400 [exp]	17.32	0.8596
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.006G120200 [exp]	17.88	0.8561
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.019G041900 [exp]	19.41	0.8433
AT3G45830			unknown protein		Potri.001G233800 [exp]	22.36	0.8487

Compare expression of checked genes

Potri.011G169100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.