Plant FIBer expression Database

Potri.011G169200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G26450 324 / 2e-100 WIP1 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G472600
[exp]
1202 / 0 AT4G26450 328 / 6e-102 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008342
[exp]
514 / 1e-173 AT4G26450 211 / 6e-59 unknown protein
Lus10027095
[exp]
274 / 5e-86 AT4G26450 118 / 2e-29 unknown protein
Lus10027096
[exp]
273 / 2e-85 AT4G26450 116 / 2e-28 unknown protein
PFAM info
Representative CDS sequence
>Potri.011G169200.4 pacid=42780946 polypeptide=Potri.011G169200.4.p locus=Potri.011G169200 ID=Potri.011G169200.4.v4.1 annot-version=v4.1
ATGCATGCTAGGCATAGAAGTCCTGGAAATGGATACAGGTCTGGTTCCATGGGGGTGGGAATGGGTGCATCCAGAATATCCCCAGATAATTCTGCTAGAG
GTCATGGTTTTTACAATTCCGAATATAGAAGCTTCAATAACCGTGGCTTTGCCCATGGCCAGGGCCACCCCAAGTCTTTTCGTCAGCCACCACCACAGAA
AGGCGATATTTTAATGGAAGCTGGTAGGCTTGCAGCTGAGTATTTAGTTTCCAAGGGATTGTTACCTCAGAGTGCACTTTCTGGTAAATGGCAGAATGGT
AGTTTCAAAAGGCAAGCTGGGGATTATCAGGACTTTAGGCAACAAGAAGACCTTATGCAGGAGGGCCGAACATCTGCCCATTCTCGGCTAGGTAGTGGTG
CTTCTGATGCTGGGTTGGGCAGGAGAAGATACCCTGATGACTTCAATCTGAGGAATCATGTGAAGGGAAGGAGGCGAGGAGAGCATTACCGGGGTTACAG
CTCAGAGTGGGGTAGAGAATATGGGAGGAGTGGGTCATTGTCAGATAGGAATAGAATGTCTCCTGATACAGAGGAGAATGATACAGTTTCTGGACACTGC
GAAGAGCAGCAAGTTAGCAATGATGTTGGAGATGGAATGGAGAAATCTGGTCAGAGTGGGGTGGCACCAGAAAGTGAAGAAACTGCTGATATAGAATCAG
GACTGAGCAAGTACAACTATCCAAATGAAACTGGCTCCAAGGCAAGTTCTTCTAGTGTTCTGAAAGAAGAGACTGATGGTGAACCCTCCAAGGGCTCTGG
TGACCCAGCAAACGTAAATCTGGGGAACAAGGATATGAAGGATGGCAATTATGATTATGAAATTGAGAAACAGATTGTTCCAGAGGATTTACCTATCCAG
CAGAGTGATCTCTCGGGCAAGGATGAATCTGATTTACTAACATTGAGCAAGTTTGCCAATGTGCCAACGAAAATGCGCTCTGCATTGTCATGTAGGTCCT
CCAGGGTTGATCAAGTTCCCAATAATGAAGAGGAAGACACATCTGATAATGGGCTTAACAAAGGATCTGAAGATGTAGTTCAAGATGGCGTGGACAATGT
CTCCGCAACTGATGTGAATGCAACACATGATTCAAATTGTCCCAACTCCGAAATAATTAAAGTAGCTGTTGTCCAGCCTGCCGAGGATGCTGATGAAGAA
GGCCTTGAATATGGTGCTGTGGAGGGAAAATGTGTGAGGTCTCATTCTTTTTCAGATGGAGCTTTTATGCATGACAATGAACAAGAATCTAGTCTAGGAC
TTTCAGGTTTTGGAAGGTCCACCTCAGTCAAAGAGCGAGGTGAGAAACGGGCTGCTGAAAGCAGTGGTATTGGCGAGGCAGCCAAAAAACCAAGAGAATG
GCTTTCATCCTTGGTTAACACCGCTGATGAGCATTTGCACCGCACTGATTTAAGTGAAAATACTGGGGGTTCACAAGAAGAGAGGGCTTCACCCGATCAG
CAGGTGACTATGGCTGTGGCAGCTACCCAAGACAGTGACATTAGTAATTGTCAATTTCCAAGGATTGCTGGTGAACCAGGCTTCAAGTATGCTGAAGAGA
AACAGCTATTTCCTAGTTCATTTAAAATCGTTGATCTTAATCTCATGGAAACATCTGATATAAATGAAACTCATTGTAGCGATCCAGTTCTCACATACCC
ATCTATTATGACAACCAAAAGAGAAGCACCACAGGTTGACATTGATTTGTCAATAAGTAATTCCAATGTGTCCGATGAATATGCTAGACATATGAGTTAT
GGCAAGCAGGTTGAAATAATTGATCTAGAGAATGATTGCACCCTGGAAGACAAGGACTTTGATAATTCACAAAGAAAGATGGAGACTGCATTTACTGGGA
CAGAAGGTTTTCCTAGCCTTCCACAGAATACTGGTGATATCACTGATGTTCAGGTCAATTATGATGGCCTTATGCTCGCAGAGTTTCTCAACAATCTCTC
AAATTGTACCTCAGAACCAGATAACATAACTCCGCTGCAAAGCGAAATGGACCTTGACAATGGAGAGGGGACTCTTGGTGATGATGACTCGATTTATATG
TCCCTGGGAGAAATACCATTAAGCTTCATACCTGCCTGGGAACCACCAACCCCTCAGGAGTATGAGAAGCCCTTTTGA
AA sequence
>Potri.011G169200.4 pacid=42780946 polypeptide=Potri.011G169200.4.p locus=Potri.011G169200 ID=Potri.011G169200.4.v4.1 annot-version=v4.1
MHARHRSPGNGYRSGSMGVGMGASRISPDNSARGHGFYNSEYRSFNNRGFAHGQGHPKSFRQPPPQKGDILMEAGRLAAEYLVSKGLLPQSALSGKWQNG
SFKRQAGDYQDFRQQEDLMQEGRTSAHSRLGSGASDAGLGRRRYPDDFNLRNHVKGRRRGEHYRGYSSEWGREYGRSGSLSDRNRMSPDTEENDTVSGHC
EEQQVSNDVGDGMEKSGQSGVAPESEETADIESGLSKYNYPNETGSKASSSSVLKEETDGEPSKGSGDPANVNLGNKDMKDGNYDYEIEKQIVPEDLPIQ
QSDLSGKDESDLLTLSKFANVPTKMRSALSCRSSRVDQVPNNEEEDTSDNGLNKGSEDVVQDGVDNVSATDVNATHDSNCPNSEIIKVAVVQPAEDADEE
GLEYGAVEGKCVRSHSFSDGAFMHDNEQESSLGLSGFGRSTSVKERGEKRAAESSGIGEAAKKPREWLSSLVNTADEHLHRTDLSENTGGSQEERASPDQ
QVTMAVAATQDSDISNCQFPRIAGEPGFKYAEEKQLFPSSFKIVDLNLMETSDINETHCSDPVLTYPSIMTTKREAPQVDIDLSISNSNVSDEYARHMSY
GKQVEIIDLENDCTLEDKDFDNSQRKMETAFTGTEGFPSLPQNTGDITDVQVNYDGLMLAEFLNNLSNCTSEPDNITPLQSEMDLDNGEGTLGDDDSIYM
SLGEIPLSFIPAWEPPTPQEYEKPF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G26450 WIP1 unknown protein Potri.011G169200
[exp]
0 1
AT1G55870 ATPARN, AHG2 ARABIDOPSIS THALIANA POLY\(A\)... Potri.001G368401
[exp]
2.82 0.8908
AT1G03280 Transcription factor TFIIE, al... Potri.010G102000
[exp]
2.82 0.8874
AT4G13970 zinc ion binding (.1) Potri.014G054600
[exp]
3.87 0.8908
AT4G38180 FAR1_related FRS5 FAR1-related sequence 5 (.1) Potri.004G209000
[exp]
4.00 0.9007
AT1G79000 ATHAC1, ATHPCAT... ARABIDOPSIS THALIANA P300/CBP ... Potri.019G036800
[exp]
5.09 0.8978
AT1G73100 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)... Potri.001G036800
[exp]
6.48 0.8899 SUVH3.4,SDG950
AT2G32910 DCD (Development and Cell Deat... Potri.005G043100
[exp]
6.92 0.8834
AT2G19130 S-locus lectin protein kinase ... Potri.019G119200
[exp]
7.00 0.8886
AT2G29120 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, gluta... Potri.018G011650
[exp]
7.07 0.8838
AT5G05550 Trihelix sequence-specific DNA binding ... Potri.010G186200
[exp]
7.93 0.8845

Potri.011G169200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.