Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	WRKY2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56270 588 / 0 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT4G26440 388 / 2e-126 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT4G26640 301 / 3e-93 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G38470 270 / 4e-82 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT2G03340 254 / 3e-76 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 245 / 1e-72 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT2G37260 214 / 4e-63 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT2G04880 202 / 3e-57 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT4G30935 164 / 7e-44 WRKY ATWRKY32, WRKY32 WRKY DNA-binding protein 32 (.1) AT4G12020 162 / 5e-41 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G472800 [exp] 1262 / 0 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.013G086000 [exp] 388 / 1e-124 AT5G56270 299 / 3e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.001G361600 [exp] 323 / 1e-101 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.019G053900 [exp] 315 / 3e-99 AT5G56270 154 / 5e-40 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.011G087900 [exp] 301 / 3e-93 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.013G153400 [exp] 296 / 3e-91 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.019G123500 [exp] 292 / 2e-89 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.010G163000 [exp] 283 / 5e-87 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.008G091900 [exp] 273 / 2e-83 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032887 [exp] 833 / 0 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10027139 [exp] 820 / 0 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10026838 [exp] 360 / 6e-114 AT5G56270 298 / 7e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10016595 [exp] 327 / 5e-103 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10003769 [exp] 323 / 3e-101 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10020215 [exp] 305 / 8e-95 AT5G56270 276 / 3e-84 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10043167 [exp] 296 / 8e-92 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2) Lus10012215 [exp] 284 / 5e-87 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1) Lus10001265 [exp] 279 / 2e-85 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10037131 [exp] 270 / 8e-83 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.011G169300.1 pacid=42781784 polypeptide=Potri.011G169300.1.p locus=Potri.011G169300 ID=Potri.011G169300.1.v4.1 annot-version=v4.1 ATGGCTGGGATTGATGATAACGTTGCTATAATTGGTGATTGGGTACCTCCTAGTCCAAGTCCAAGAGCTTTTTTCTCAGCAATGTTAGGTGATGATATTA ACTCAAGAACAATCCCAGAATCTCCTGGGGAGAAAAGAAATGAAGGGCTCTATCTGGGACAACCAGAGCAGATGGCAACAGGAAATTCTGAGAAAAAGGA TGGAGCACAAACTAGTGGTGTTCAGTTGACTGAATTAGGTACATTTTCTGAGCAAAAATCAAACTTTCGTGGAGGTCTTGTTGAAAGAATTGCAGCCAGA GCTGGATTTAATGCACCGCGGTTGAATACAGAAAGTATCAGGTCCACTGAAAGTTCTATGAACCCTGAGATTAGGTCGCCTTATTTGACAATACCACCTG GTCTCAGCCCGACAACCTTGCTGGAATCTCCAGTTTTCCTTTCAAATTTGGCACAGCCATCTCCAACAACTGGAAAATTTTCTTTTTTTCCAAATGGTAA CACCAAGAACTCCACAGTGGGCTCTGACCCTCCTGATAAAAGTAAAGAAACTTTCTTTGACAACATTGATTCATCTTCATTTGCGTTCAAGCCTATGGGA GAATCAGGTTCTTTTTTCCTTGGTGGAACAAGCAAGCAATCCTTTCCCAGTATCGATGTTTCTGTTCACTCTGAGAATGCTTTTCAGTCGCATGGTGTGG AACCCGCCAAAACTCAGTTTGAGAGTAGAAACAGCCTCCATTTCCGAGCAGAATTCTCCAAATTGACTACTGAAAAGGATAATGGATGTATTACTGTAGC AGATCAGAGGACCTTTGACACTGTTGCTGGCAACGCCGAGCATTCTTCCCCTCTTGCTGAGCAACAAGATGAAGAAGGAGATCAAAGAGCCAGTGAAGAT TCAATGGCTGCTGGAGGCACACCATCTGAGGATGCATATAATTGGAGAAAATATGGGCAGAAACAAGTAAAAGGCAGTGAGTATCCACGGAGTTATTACA AGTGCACGCATCCAAATTGCCCAGTTAAGAAGAAAGTGGAACGTTCTCATGAGGGCCATATAACAGAGATCATATATAAGGGGGCACACAACCATCCCAA GCCACCACCCAACCGGAGGTCAGCCACTGGATCAATGGATACACAACTGGATATTCCTGAACAAGCTGGGCCACAGGTTGGTGCTGTTAATGATTCGGTT TGGGCAGGTACACAAAAAGGAACTGCTGCAGGAACTCCTGATTGGAGGAATGACAATGTCGAGGTTTCATCTTCAGCATCTGGGGGCCTAGGCCCTGAAT TCGGGAATCCATCTTCCTCGGTACAGGGTCAGAGCGGAACTCCCTTTGAGTCAGCTGATGCTGTGGATGCCTCGTCTACCTTTTCAAATGATGAAGATGA TGATCGGGCTACACATGGCAGTGTAGGTTATGATGGTGAAGGAGAAGAATCTGAGTCCAAGAGAAGGAAAGTTGAAACATATGCAACCGAAATGAGTGGA GCCACCAGAGCAATCCGTGAGCCTAGAGTTGTGGTCCAGACAACCAGTGAGGTGGATATCCTTGACGATGGATATCGCTGGAGAAAGTATGGACAGAAAG TTGTTAAAGGAAATCCAAATCCTAGGAGTTATTACAAGTGCACTAGCGCAGGCTGCACAGTGAGAAAGCATGTGGAGAGGGCATCGCATGACCTTAAGTC AGTGATCACTACGTATGAGGGGAAGCACAATCATGATGTCCCTGCTGCTCGCAATAGCAACCATGTCAACTCTGGCACCTCTAATGCCACACCAGCCCAA GCTGGCATCGCAGTTCAAACCCAAGTTCACAGACCTGAGGCATCCCAAGTTCACAACAGCATGACTAGTAGATTTGAGAGGCCTCCTGCATTTGGATCCT TCAGGCAGCAGCTGGGGCCTTCGGCTGGCTTCTCATTTGGAATGAATCAACCTGGGTTTGCCAATATGGGAATGGCTGGGTTAGGTCCAGGGCAACCAAG GATGCCAGTTATGCCCATGCATCCATACTTAGCACAGCAACGTGCAGTGAATGAAATGGGGTTGATGATGCCGAAAGGAGAAGCAAAGGTGGAGCCAGTG ACTGAAGCTAATATGAGCCTGTCCTCCAACAATCCAACAGTGTATCAGCAAATAATGAGTAGGCTGCCTCAGATGTAA
AA sequence Show only first row Show all	>Potri.011G169300.1 pacid=42781784 polypeptide=Potri.011G169300.1.p locus=Potri.011G169300 ID=Potri.011G169300.1.v4.1 annot-version=v4.1 MAGIDDNVAIIGDWVPPSPSPRAFFSAMLGDDINSRTIPESPGEKRNEGLYLGQPEQMATGNSEKKDGAQTSGVQLTELGTFSEQKSNFRGGLVERIAAR AGFNAPRLNTESIRSTESSMNPEIRSPYLTIPPGLSPTTLLESPVFLSNLAQPSPTTGKFSFFPNGNTKNSTVGSDPPDKSKETFFDNIDSSSFAFKPMG ESGSFFLGGTSKQSFPSIDVSVHSENAFQSHGVEPAKTQFESRNSLHFRAEFSKLTTEKDNGCITVADQRTFDTVAGNAEHSSPLAEQQDEEGDQRASED SMAAGGTPSEDAYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSHEGHITEIIYKGAHNHPKPPPNRRSATGSMDTQLDIPEQAGPQVGAVNDSV WAGTQKGTAAGTPDWRNDNVEVSSSASGGLGPEFGNPSSSVQGQSGTPFESADAVDASSTFSNDEDDDRATHGSVGYDGEGEESESKRRKVETYATEMSG ATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSNHVNSGTSNATPAQ AGIAVQTQVHRPEASQVHNSMTSRFERPPAFGSFRQQLGPSAGFSFGMNQPGFANMGMAGLGPGQPRMPVMPMHPYLAQQRAVNEMGLMMPKGEAKVEPV TEANMSLSSNNPTVYQQIMSRLPQM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.011G169300 [exp]	0	1	WRKY2.1
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.009G163400 [exp]	6.00	0.7502
AT2G30933			Carbohydrate-binding X8 domain...		Potri.002G059600 [exp]	10.04	0.7540
AT3G55480		AP-3beta, PAT2	beta-subunit of adaptor protei...		Potri.010G202800 [exp]	12.64	0.7043
AT5G24340			3'-5' exonuclease domain-conta...		Potri.015G009500 [exp]	26.72	0.6459
AT2G47010			unknown protein		Potri.002G187700 [exp]	28.37	0.6506
AT5G08390			Transducin/WD40 repeat-like su...		Potri.008G002300 [exp]	33.58	0.7465
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Potri.002G149400 [exp]	33.91	0.7372
AT3G17900			unknown protein		Potri.010G033900 [exp]	39.42	0.6496
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.006G144500 [exp]	40.39	0.6511
AT4G03340			Core-2/I-branching beta-1,6-N-...		Potri.019G104600 [exp]	42.07	0.7284

Compare expression of checked genes

Potri.011G169300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.