Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55610 1501 / 0 BRL1 BRI1 like (.1.2) AT3G13380 1491 / 0 BRL3 BRI1-like 3 (.1) AT4G39400 989 / 0 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT2G01950 924 / 0 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT5G07280 545 / 1e-173 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 495 / 1e-155 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 468 / 6e-145 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G74360 466 / 2e-144 Leucine-rich repeat protein kinase family protein (.1) AT2G02220 460 / 1e-143 ATPSKR1 phytosulfokin receptor 1 (.1) AT4G20140 466 / 3e-143 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G472900 [exp] 2124 / 0 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.005G086500 [exp] 948 / 0 AT4G39400 1398 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G078100 [exp] 939 / 0 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.008G140500 [exp] 924 / 0 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.010G101100 [exp] 902 / 0 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.012G139000 [exp] 548 / 1e-173 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G139700 [exp] 483 / 6e-151 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G398500 [exp] 481 / 6e-151 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.003G074000 [exp] 481 / 1e-150 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033533 [exp] 989 / 0 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 977 / 0 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 971 / 0 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 954 / 0 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 907 / 0 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10039132 [exp] 907 / 0 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10038875 [exp] 522 / 4e-164 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10014996 [exp] 511 / 6e-160 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10009213 [exp] 468 / 9e-146 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10016395 [exp] 464 / 7e-144 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G169600.2 pacid=42781619 polypeptide=Potri.011G169600.2.p locus=Potri.011G169600 ID=Potri.011G169600.2.v4.1 annot-version=v4.1 ATGAAGAAACACTGGAGGATATCATCACAAAGGCAACCACCCAAAGCCATGATTAGAATATTTGGTTATGTATCGCTGTTGCTGCTGTTATTTATGCCAT CATCATCACAAGCCAGAGAGTTGTCTTCACAGCAAAGTAGCAATAATGAAGTTGTGGGGTTATTAGCCTTCAAGAAATCCTCTGTTCAATCTGATCCAAA GAACTTATTAGCCAACTGGTCTCCCAATTCTGCTACTCCATGTTCATGGTCAGGCATCTCTTGCTCTCTTGGTCATGTCACCACTCTCAACCTCGCCAAA GCTGGTCTCATTGGAACCCTAAACCTCCATGACCTCACTGGGGCCTTGCAATCTCTCAAACATCTTTATTTGCAAGGAAATTCATTCTCTGCTACTGATC TTTCTGCTTCCCCATCCTGTGTTCTTGAGACTATTGACTTGTCTTCAAACAATCTCTCCGACCCTCTTCCAAGAAACTCCTTTTTAGAGTCTTGTATTCA TCTCTCTTATGTTAATCTCTCTCACAATTCCATTTCTGGTGGTACCCTTCGATTTGGTCCTTCCTTGCTACAACTTGACCTCTCTCGCAATACTATTTCT GATTCTACCTGGTTGACCTATTCCCTTTCTACCTGCCAGAACTTGAATCTTCTCAACTTCTCTGATAACAAGCTTACTGGAAAACTTGGAGCAACTCCCT CGTCTTGCAAGAGTCTATCCATTTTAGACCTATCATACAATCCATTCTCTGGGGAGATACCTCCTACTTTTGTTGCAGACTCTCCACCATCTCTCAAGTA TTTGGATCTCTCACACAACAACTTCTCTGGCAGCTTCTCCAGCCTTGATTTTGGGCATTGTAGCAATCTTACTTGGCTCAGTTTGTCACAAAATAGGCTC TCTGGCAATGGATTTCCATTTAGTTTGAGGAACTGTGTGCTTCTACAGACGCTTAACCTCTCCCGTAACGAGCTAAAATTCAAGATTCCTGGTTCCTTGT TGGGGAGTTTAACAAATTTAAGGCAGTTGTCTCTGGCTCACAATCTGTTTTATGGTGATATTCCTCCCGAGTTGGGACAGGCGTGTCGAACTCTACAGGA ATTGGATCTATCAGCAAACAAACTCACCGGTGGCTTGCCGCAAACTTTTGCATCGTGTTCTTCTATGCGGAGTCTTAATCTTGGCAACAATCTGCTCTCA GGGGATTTCCTTAGTACTGTTGTGAGCAAACTTCAAAGTCTGAAATATCTGTATGTTCCATTCAACAACATCACTGGTACTGTGCCTCTGTCTCTTACAA AGTGTACCCAACTTGAAGTGCTGGACCTCAGTTCTAATGCCTTTACTGGGGATGTTCCTTCTAAATTGTGCTCCTCGTCAAACCCCACCGCGCTGCAAAA GTTACTCCTAGCTGACAATTATCTATCAGGAAATGTTCCACCAGAGCTTGGAAGCTGCAAGAACCTGAGGAGCATTGATCTCAGTTTCAACAATCTAATT GGACCAATTCCCATGGAGGTTTGGACCTTGCCAAATCTCTTGGACTTGGTTATGTGGGCAAACAACCTCACTGGTGAGATCCCGGAAGGCATCTGTGTTA ACGGAGGAAACCTCGAGACTTTGATTCTCAACAACAATCTCATCACAGGAAGCATTCCGCAGTCCATAGGCAATTGCACCAATATGATTTGGGTTTCCCT TTCCAGCAACCGGCTTACCGGAGAAATTCCTGCTGGCATTGGAAATCTAGTTGACCTGGCTGTTCTCCAAATGGGTAATAATTCACTTACCGGGCAAATA CCACCAGAGCTTGGCAAGTGTCGGAGCCTCATTTGGCTTGATTTGAACAGCAACAACCTAACTGGTCCTCTTCCACCTGAGCTTGCAGACCAAGCTGGTC TAGTTGTTCCTGGAATTGTTTCTGGGAAGCAGTTTGCATTTGTAAGAAATGAGGGCGGGACATCATGCCGAGGAGCTGGGGGATTGGTTGAGTTTCAGGG TATCCGGGCAGAAAGGCTGGAAAATCTTCCTATGGCTCACTCTTGCTCAACAACAAGAATTTACTCTGGCATGACAGTTTATACATTCACCACCAATGGC AGCATGATATTCCTTGATCTTGCCTACAACTCACTGTCAGGAGATATCCCTCAAAATTTTGGTTCAATGAGTTATTTGCAGGTCTTGAACTTGGGGCATA ATAAGCTAACCGGAAATATTCCAGACAGTTTTGGAGGTTTGAAAGCAATTGGAGTTCTGGATCTCTCACACAATGATCTTCAAGGATTTCTGCCAGGGTC TTTAGGGACTCTCTCGTTTCTTAGTGATCTTGATGTGTCGAACAACAACCTCACTGGTCCTATCCCTTCTGGGGGGCAGTTGACAACTTTTCCTCAATCC AGGTATGAAAACAATTCTGGTCTTTGCGGTGTGCCATTGCCCCCATGCAGCTCTGGAGACCACCCCCAAAGTCTTAACACTCGGAGAAAGAAGCAATCTG TGGAAGTAGGTATGGTCATTGGCATCACATTTTTCATCTTGTGCGTCTTTGGTCTTTCATTGGCTCTCTATCGAGTGAAGAAGTACCAGCAGAAGGAAGA ACAGAGGGAGAAGTACATCGAAAGTCTCCCAACTTCAGGTAGCAGCAGCTGGAAACTTTCAGGTGTCCCCGAGCCTTTGAGCATCAACATTGCCACATTC GAGAAACCTCTACGGAAGCTGACTTTTGCTCATCTACTTGAAGCTACAAATGGTTTCAGTGCTGATAGCTTAATAGGGTCTGGTGGGTTTGGAGAGGTAT ACAAGGCACAACTAGGAGATGGTTGTGTTGTTGCTATAAAGAAGCTGATTCATGTCACAGGACAGGGTGACAGGGAGTTTATGGCAGAAATGGAAACTAT CGGGAAGATCAAGCACAGAAACCTGGTTCCTTTGCTGGGTTATTGCAAAATTGGAGAGGAGAGGCTTCTTGTGTATGAATACATGAAATGGGGGAGTTTA GAGTCTGTTCTTCATGACAGGTCGAAAGGAGGATGCTCAAGGCTTGATTGGGCAGCAAGAAAGAAGATTGCAATAGGGTCAGCAAGAGGCCTTGCTTTCC TTCATCACAGCTGCATACCTCACATTATCCACCGTGACATGAAGTCTAGTAATGTTCTTTTAGATGAAAACTTTGAAGCGCGGGTATCTGATTTTGGAAT GGCAAGATTGGTGAACGCCCTTGAAACACATCTTAGCGTGAGTACACTTGCAGGAACTCCAGGTTATGTGCCCCCTGAGTATTATCAGAGCTTTAGATGC ACATCAAAAGGGGATGTCTACAGCTATGGTGTCATACTTCTGGAGCTCCTCTCAGGCAAGAAGCCAATAGATTCCGCTGAGTTTGGTGATGATAACAACC TTGTAGGATGGGCAAAGCAGCTATATAGAGAGAAGAGATGCAATGAGATATTAGACCCTGAGTTGATGACACAAACATCTGGAGAGGCCAAATTATACCA GTATTTGAGAATTGCTTTTGAGTGCCTTGATGACAGGCCTTTCAGACGGCCAACCATGATTCAAGTTATGGCTATGTTCAAAGAGCTTCAGGTTGACTCT GAAAGCGATATCCTAGATGGTTTGTCATTGAAAGATGCAAGTATTGATGAATTCAAGGAGGAGTCTAGTTCATGA
AA sequence Show only first row Show all	>Potri.011G169600.2 pacid=42781619 polypeptide=Potri.011G169600.2.p locus=Potri.011G169600 ID=Potri.011G169600.2.v4.1 annot-version=v4.1 MKKHWRISSQRQPPKAMIRIFGYVSLLLLLFMPSSSQARELSSQQSSNNEVVGLLAFKKSSVQSDPKNLLANWSPNSATPCSWSGISCSLGHVTTLNLAK AGLIGTLNLHDLTGALQSLKHLYLQGNSFSATDLSASPSCVLETIDLSSNNLSDPLPRNSFLESCIHLSYVNLSHNSISGGTLRFGPSLLQLDLSRNTIS DSTWLTYSLSTCQNLNLLNFSDNKLTGKLGATPSSCKSLSILDLSYNPFSGEIPPTFVADSPPSLKYLDLSHNNFSGSFSSLDFGHCSNLTWLSLSQNRL SGNGFPFSLRNCVLLQTLNLSRNELKFKIPGSLLGSLTNLRQLSLAHNLFYGDIPPELGQACRTLQELDLSANKLTGGLPQTFASCSSMRSLNLGNNLLS GDFLSTVVSKLQSLKYLYVPFNNITGTVPLSLTKCTQLEVLDLSSNAFTGDVPSKLCSSSNPTALQKLLLADNYLSGNVPPELGSCKNLRSIDLSFNNLI GPIPMEVWTLPNLLDLVMWANNLTGEIPEGICVNGGNLETLILNNNLITGSIPQSIGNCTNMIWVSLSSNRLTGEIPAGIGNLVDLAVLQMGNNSLTGQI PPELGKCRSLIWLDLNSNNLTGPLPPELADQAGLVVPGIVSGKQFAFVRNEGGTSCRGAGGLVEFQGIRAERLENLPMAHSCSTTRIYSGMTVYTFTTNG SMIFLDLAYNSLSGDIPQNFGSMSYLQVLNLGHNKLTGNIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGTLSFLSDLDVSNNNLTGPIPSGGQLTTFPQS RYENNSGLCGVPLPPCSSGDHPQSLNTRRKKQSVEVGMVIGITFFILCVFGLSLALYRVKKYQQKEEQREKYIESLPTSGSSSWKLSGVPEPLSINIATF EKPLRKLTFAHLLEATNGFSADSLIGSGGFGEVYKAQLGDGCVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVPLLGYCKIGEERLLVYEYMKWGSL ESVLHDRSKGGCSRLDWAARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNVLLDENFEARVSDFGMARLVNALETHLSVSTLAGTPGYVPPEYYQSFRC TSKGDVYSYGVILLELLSGKKPIDSAEFGDDNNLVGWAKQLYREKRCNEILDPELMTQTSGEAKLYQYLRIAFECLDDRPFRRPTMIQVMAMFKELQVDS ESDILDGLSLKDASIDEFKEESSS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55610		BRL1	BRI1 like (.1.2)		Potri.011G169600 [exp]	0	1
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Potri.006G270500 [exp]	4.24	0.7740
AT1G55610		BRL1	BRI1 like (.1.2)		Potri.001G472900 [exp]	4.47	0.7790
AT5G49665			Zinc finger (C3HC4-type RING f...		Potri.002G107902 [exp]	11.66	0.6115
AT2G28940			Protein kinase superfamily pro...		Potri.001G240500 [exp]	15.49	0.6744
AT2G25430			epsin N-terminal homology (ENT...		Potri.006G255000 [exp]	16.73	0.6657
AT5G46070			Guanylate-binding family prote...		Potri.004G049400 [exp]	17.23	0.6794
AT1G13790		FDM4	factor of DNA methylation 4, X...		Potri.010G184800 [exp]	19.44	0.6704
					Potri.016G044901 [exp]	20.04	0.5753
AT4G15890			binding (.1)		Potri.010G013300 [exp]	20.90	0.6661
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121750 [exp]	21.16	0.7016

Compare expression of checked genes

Potri.011G169600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.