Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55590 618 / 0 RNI-like superfamily protein (.1) AT2G17020 270 / 9e-82 F-box/RNI-like superfamily protein (.1) AT5G23340 72 / 3e-13 RNI-like superfamily protein (.1) AT4G15475 68 / 8e-12 F-box/RNI-like superfamily protein (.1) AT2G25490 65 / 1e-10 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT3G58530 64 / 1e-10 RNI-like superfamily protein (.1) AT1G21410 55 / 1e-07 SKP2A F-box/RNI-like superfamily protein (.1) AT5G01720 54 / 2e-07 RNI-like superfamily protein (.1) AT5G25350 52 / 1e-06 EBF2 EIN3-binding F box protein 2 (.1) AT5G27920 49 / 1e-05 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G179571 [exp] 252 / 3e-75 AT2G17020 665 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.009G139500 [exp] 236 / 3e-69 AT2G17020 638 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.006G195800 [exp] 71 / 6e-13 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.002G074700 [exp] 62 / 5e-10 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.018G130800 [exp] 62 / 6e-10 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G238300 [exp] 61 / 6e-10 AT5G23340 98 / 1e-22 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 59 / 8e-09 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 58 / 1e-08 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 57 / 4e-08 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012518 [exp] 195 / 4e-54 AT2G17020 548 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10023988 [exp] 174 / 4e-47 AT2G17020 519 / 3e-178 F-box/RNI-like superfamily protein (.1) Lus10025093 [exp] 82 / 1e-17 AT2G17020 216 / 5e-67 F-box/RNI-like superfamily protein (.1) Lus10012764 [exp] 66 / 5e-11 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10030102 [exp] 64 / 2e-10 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10012294 [exp] 63 / 2e-10 AT3G58530 474 / 7e-169 RNI-like superfamily protein (.1) Lus10015980 [exp] 62 / 7e-10 AT3G58530 442 / 4e-156 RNI-like superfamily protein (.1) Lus10002165 [exp] 62 / 9e-10 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10034013 [exp] 62 / 1e-09 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10028645 [exp] 61 / 1e-09 AT1G21410 520 / 0.0 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G169800.2 pacid=42781218 polypeptide=Potri.011G169800.2.p locus=Potri.011G169800 ID=Potri.011G169800.2.v4.1 annot-version=v4.1 ATGATGGATGGTTTGCCGAGCTGTTTGATCAGCGAAGAGATATTGTGGAAGATGTTGGATTTGGAGACACTGTGTACAGTGGCTTGTGTCAGCAAATCCC TGCGCTTCTCCGTGGACACCGAGGTCCTTCCTTACCTGGCTTCTCTCGATCTCTCCATTGTATCAATAGATGAACACGCTCTTTATCACATCCTGAGTCG GTTTAAGAGCCTTAATACACTGACCCTTAATTGCCAACGCCTCTATGATTCGTCGCTCCTCCCTTTTTTGGCTCCACAAATCCAACAGCTCAATCTTTTT AGCTGCTCTTTACTCTCTTCTTCAGTTCTTAATTCTATAGGAGCTAACTGCCCCTTTCTCAGGGTGCTTGCAGTTGAATTCGCAGACCAGGGCTCGCCTC CTATTTTGTTCAGAAAGAATGTTGCCTACATGCTTAACAAGTGCCAGTATTTGGAGCGTCTCTCTCTAAAGATCAAGGGGACAGAAGTTGATGCGAGTGC CTTCCAGTCAATGGAATTCTCCCTGCCACGAAGTATCAAATTTCTCAAGTTGAAACCGATGCTTGAAAATAATGCAATCCATCTCGCAAACAGACTCAGA GTTTCCAAATCACCATCGTCCTCTGGTTTTGTATTGCAGTTCTTGTCACTTCTGTTAGATGTGATATCGGACAGGCTACTTGTCGCCATATCCAACTCTC TTCCTCTTCTGGTAGAGTTGCATCTTGAAGATAGACCAGATAAGGAACCATTACCTGGCCTCGATTTGACCAATGGCGGGCTTCATTTCTTAGGCTGTTG TCATTTTCTGACTGACCTCTCCCTTAAACGTAGTAGGCAGAACTACCAAGGATCATTTAAAAGAATAAATGATATGGGGATGTTTCTGCTTTCACAGAGG TGCCAGGCTTTGGAATCAGTGAGACTCAGTGGATTCTCTAAAGTTAGTGATGCTGGCTTTGCATCTTTGCTGCACACCTGCCAGAAGCTAAAGAAATTTG AAGTTCGAAATGCCTTTTTATTGTCAGACTTGGCCTTTCATGATCTCATCCAAGCCCCATGTACCCTAGTTGAAGTGAGACTATTGTCCTGCGGGCTCAT AACAAGTGAAACTGTTAAGAAATTGGCCTTTTCTAGGAGCTTGGAGGTGCTTGACCTTTGTGGCTGCAAGAGTGTAGCAGATTCATGCCTCAGCTCCATT TCATGTCTTCAAAGATTAACGACTTTGAATCTCACAGGAGCTGACATTACTGATAGTGGTTTATCAGTTATTGGTCAGGGGAACACACCCATTTCGTATC TGTGTCTTAGAGGCTGTAAGAGGATAACTGACAAAGGAATCTCTTTTTTGCTGTGTGGTGGTGGGGCAATTGCGCTAACATTGTCAGCACTGGATTTAGG TTACATGCCAGGAATATCAGATAATGGCATTCTTACTATTGCTACCTTTGGTAGAGAGATAACTGAATTGTGCATTAGGAGTTGCTTTTATGTGACTGAT TTGGCTATGCGAGCACTGGCTGCAAAGAGAAGGTCACAAGACAGAAGTAAACAACTTTGCCGAGTTGATATTTTCAACTGTGTGGGGCTATCTGCTGATG CACTGAAACTTCTAAGGAAGCCTTTATTTCGTGGACTGCATTGGATTGGTATTGGGAAAACTCATTTATCAAGTAACGAAGGCACCATGATTACTGAAAT TCAGAAGGAACGCCCCTGGCTGACTTTGTGTTTGGATGGATGTGAAATGCAATGTCATGATGGATGGCAGTTCCATTCTCCCTAA
AA sequence Show only first row Show all	>Potri.011G169800.2 pacid=42781218 polypeptide=Potri.011G169800.2.p locus=Potri.011G169800 ID=Potri.011G169800.2.v4.1 annot-version=v4.1 MMDGLPSCLISEEILWKMLDLETLCTVACVSKSLRFSVDTEVLPYLASLDLSIVSIDEHALYHILSRFKSLNTLTLNCQRLYDSSLLPFLAPQIQQLNLF SCSLLSSSVLNSIGANCPFLRVLAVEFADQGSPPILFRKNVAYMLNKCQYLERLSLKIKGTEVDASAFQSMEFSLPRSIKFLKLKPMLENNAIHLANRLR VSKSPSSSGFVLQFLSLLLDVISDRLLVAISNSLPLLVELHLEDRPDKEPLPGLDLTNGGLHFLGCCHFLTDLSLKRSRQNYQGSFKRINDMGMFLLSQR CQALESVRLSGFSKVSDAGFASLLHTCQKLKKFEVRNAFLLSDLAFHDLIQAPCTLVEVRLLSCGLITSETVKKLAFSRSLEVLDLCGCKSVADSCLSSI SCLQRLTTLNLTGADITDSGLSVIGQGNTPISYLCLRGCKRITDKGISFLLCGGGAIALTLSALDLGYMPGISDNGILTIATFGREITELCIRSCFYVTD LAMRALAAKRRSQDRSKQLCRVDIFNCVGLSADALKLLRKPLFRGLHWIGIGKTHLSSNEGTMITEIQKERPWLTLCLDGCEMQCHDGWQFHSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55590			RNI-like superfamily protein (...		Potri.011G169800 [exp]	0	1
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.016G063300 [exp]	8.06	0.8293
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.009G144300 [exp]	10.58	0.7750
AT5G25070			unknown protein		Potri.002G000800 [exp]	11.66	0.8156
AT5G20610			unknown protein		Potri.006G145500 [exp]	13.96	0.8123
AT5G28530	FAR1_related	FRS10	FAR1-related sequence 10 (.1)		Potri.014G167000 [exp]	21.90	0.7478
AT1G54380			spliceosome protein-related (....		Potri.007G124150 [exp]	23.23	0.8074
AT4G23840			Leucine-rich repeat (LRR) fami...		Potri.001G092000 [exp]	25.69	0.7792
AT1G67440		EMB1688	embryo defective 1688, Minichr...		Potri.016G023500 [exp]	27.11	0.7752
AT3G62900			CW-type Zinc Finger (.1)		Potri.005G028700 [exp]	27.87	0.7852
AT5G09420		MTOM64, ATTOC64...	outer membrane 64, ARABIDOPSIS...		Potri.001G205300 [exp]	30.85	0.7428

Compare expression of checked genes

Potri.011G169800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.