Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CSN6.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56280 511 / 0 CSN6A COP9 signalosome subunit 6A (.1) AT4G26430 501 / 0 CSN6B COP9 signalosome subunit 6B (.1) AT5G05780 98 / 2e-23 RPN8A, AE3, ATHMOV34 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) AT3G11270 96 / 8e-23 MEE34 maternal effect embryo arrest 34, Mov34/MPN/PAD-1 family protein (.1.2) AT2G39990 49 / 2e-06 AteIF3f, EIF2 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G065300 [exp] 94 / 4e-22 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.010G192200 [exp] 94 / 8e-22 AT5G05780 560 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.008G065200 [exp] 91 / 4e-21 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.010G192000 [exp] 62 / 7e-11 AT2G39990 431 / 7e-154 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Potri.008G065500 [exp] 44 / 6e-05 AT2G39990 306 / 3e-105 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027082 [exp] 533 / 0 AT5G56280 527 / 0.0 COP9 signalosome subunit 6A (.1) Lus10025607 [exp] 266 / 3e-90 AT5G56280 261 / 1e-88 COP9 signalosome subunit 6A (.1) Lus10027775 [exp] 91 / 7e-21 AT5G05780 555 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Lus10035522 [exp] 89 / 5e-20 AT5G05780 550 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Lus10025606 [exp] 71 / 2e-15 AT4G26430 75 / 1e-17 COP9 signalosome subunit 6B (.1) Lus10028272 [exp] 66 / 5e-12 AT2G39990 431 / 9e-154 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Lus10040218 [exp] 65 / 7e-12 AT2G39990 423 / 2e-150 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [poplar] [flax] JAB PF01398 [poplar] [flax] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease CL0366 [poplar] [flax] PF13012 [poplar] [flax] MitMem_reg Maintenance of mitochondrial structure and function
Representative CDS sequence Show only first row Show all	>Potri.011G169900.1 pacid=42781217 polypeptide=Potri.011G169900.1.p locus=Potri.011G169900 ID=Potri.011G169900.1.v4.1 annot-version=v4.1 ATGGCGTCTTCGTCTAGCAGCGGACTGACTTTCAAGCTACACCCGCTCGTAATAGTCAACATATCCGATCACTACACTCGTGTCAAGTCTCAGACCAACG GCTGCAGCGATGGAGGCTCTGCTTCCCCCCCTCCCAGAGTATACGGTTGCGTGATTGGAGTACAGAGAGGACGCACCGTCGAGATCTTCAACAGCTTCGA GCTTCTTTACGATCCCGTCACTCACTCCCTCGACCGCGCTTTCATCGAAAAGAAGCAAGAACTCTATAAGAAGGTATTCCCACACTTTTACATATTGGGA TGGTACTCTACTGGAAGCGATGCTGAGGAATCTGATATGCATATTCATAAAGCTCTGATGGATATTAATGAAAGCCCTGTTTATGTTCTGCTCAATCCCT CTATCAATCCTGCTCAAAAGGATTTGCCTGTTACTATTTACGAGAGTGAGCTGCATGTCATCGATGGAATTCCACAGCTTATTTTTGTTTGTTCAAGTTA CACCATTGAGACGGTGGAAGCTGAACGGATCTCAGTTGATCATGTTGCTCATCTTAAGCCATCCGATGGAGGTTCTGCAGCTACACAATTGGCTGCTCAC CTTACAGGCATACATAGTGCTATAAAGATGTTGAATAGCAGAATCAGGGTGCTTCATCACTACCTTGTCGCAATGCAGAAAGGTGAAATTCCTTGTGAGA ACTCATTGCTGAGACAAGTATCAAGTCTTTTAAGGAGATTGCCAGCCATTGAATCAGAAAAATTTCAAGATGATTTCTTGATGGAATACAATGACACGCT ATTGATCGCCTACTTAGCCATGTTCACCAACTGCTCAAGCACGATGAATGAGCTAGTGGACAAATTCAACACTGCCTATGACAGGCACAGTCGAAGGGGT GGACGAACTGCTTTCATCTGA
AA sequence Show only first row Show all	>Potri.011G169900.1 pacid=42781217 polypeptide=Potri.011G169900.1.p locus=Potri.011G169900 ID=Potri.011G169900.1.v4.1 annot-version=v4.1 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQTNGCSDGGSASPPPRVYGCVIGVQRGRTVEIFNSFELLYDPVTHSLDRAFIEKKQELYKKVFPHFYILG WYSTGSDAEESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIYESELHVIDGIPQLIFVCSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAH LTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCSSTMNELVDKFNTAYDRHSRRG GRTAFI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56280		CSN6A	COP9 signalosome subunit 6A (....		Potri.011G169900 [exp]	0	1	Pt-CSN6.1
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Potri.002G148300 [exp]	5.19	0.7491	Pt-PBF1.1
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Potri.010G084800 [exp]	5.29	0.7585	PBD2.2
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Potri.005G054500 [exp]	7.74	0.7374
AT3G25545			unknown protein		Potri.010G134600 [exp]	8.94	0.7470
AT4G31180			Class II aminoacyl-tRNA and bi...		Potri.006G085400 [exp]	12.36	0.6995
AT4G39300			unknown protein		Potri.004G154800 [exp]	12.48	0.7478
AT1G28395			unknown protein		Potri.011G057300 [exp]	13.63	0.7544
AT1G45000			AAA-type ATPase family protein...		Potri.002G031400 [exp]	15.87	0.7372	RPT4.2
AT5G15750			Alpha-L RNA-binding motif/Ribo...		Potri.017G101200 [exp]	16.97	0.7223
AT4G01320		ATSTE24	Peptidase family M48 family pr...		Potri.002G162700 [exp]	20.34	0.6826	ATSTE24.2

Compare expression of checked genes

Potri.011G169900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.