Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53170 1076 / 0 FTSH11 FTSH protease 11 (.1) AT2G26140 556 / 0 FTSH4 FTSH protease 4 (.1) AT5G15250 408 / 5e-132 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G06430 396 / 2e-127 FTSH8 FTSH protease 8 (.1) AT2G30950 394 / 2e-126 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G50250 389 / 4e-124 FTSH1 FTSH protease 1 (.1) AT5G42270 386 / 3e-123 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT1G07510 343 / 1e-105 FTSH10 FTSH protease 10 (.1) AT2G29080 341 / 6e-105 FTSH3 FTSH protease 3 (.1) AT3G47060 332 / 8e-102 FTSH7 FTSH protease 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G020700 [exp] 1358 / 0 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.006G227700 [exp] 551 / 0 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.005G249200 [exp] 398 / 7e-128 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G012000 [exp] 396 / 5e-127 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G215100 [exp] 396 / 5e-127 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 392 / 2e-125 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 389 / 1e-124 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.016G099800 [exp] 350 / 2e-108 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.009G033600 [exp] 347 / 4e-107 AT1G07510 1114 / 0.0 FTSH protease 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039334 [exp] 1035 / 0 AT5G53170 1087 / 0.0 FTSH protease 11 (.1) Lus10001060 [exp] 1022 / 0 AT5G53170 1090 / 0.0 FTSH protease 11 (.1) Lus10014930 [exp] 1017 / 0 AT5G53170 1077 / 0.0 FTSH protease 11 (.1) Lus10038819 [exp] 1016 / 0 AT5G53170 1064 / 0.0 FTSH protease 11 (.1) Lus10012277 [exp] 393 / 8e-129 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10001054 [exp] 395 / 4e-127 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10016003 [exp] 395 / 1e-126 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10021824 [exp] 395 / 1e-126 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001420 [exp] 395 / 8e-126 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001573 [exp] 352 / 3e-109 AT1G07510 1194 / 0.0 FTSH protease 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF01434 [poplar] [flax] Peptidase_M41 Peptidase family M41 CL0023 [poplar] [flax] P-loop_NTPase PF07728 [poplar] [flax] AAA_5 AAA domain (dynein-related subfamily)
Representative CDS sequence Show only first row Show all	>Potri.012G000700.3 pacid=42783929 polypeptide=Potri.012G000700.3.p locus=Potri.012G000700 ID=Potri.012G000700.3.v4.1 annot-version=v4.1 ATGACTATCACTTTACAAGCTTCCCTTCTTTGCAGACCATCTTTCTCTCTTTACTCTCCTTCAAAACGACACAGCTTTCAACATCCCATCAACTCCCCTC TTTCCCTCTCTAAAACCTCATTTCCCCCCTCTCTAAATCTCAGACTCCGCCCTCACTCAATCCCTTGTACATTGCAACCTGACAATGCTGACCCACTTTC CGAAACGGTCCCTCCGATTTCAAATCCCGAAAAAACACAAGAGGTAGTGGATGTAGTACAGAGCAATGAGAGTGGAAGGGGGGAGGTGGAGGGACATGGA GGTAATTTAGTGGAGGAGAAAGAAGGTGATGGTGGTGGGGTTTATGATAGGAATGGGAGGATTAGAATGGTGGTGTTTTTTATGGGGATATGGGCCACAA TGAAAAATGGGTTTCAGAAATTGTTCATGTTGCTGGGTTCTTACTCTTCTAATTGGTGGCCATTTTGGAAACAAGAGAAGAAATTAGAGAAATTGATTGC TGAAGCTGAAGCTAATCCTAAAGATGTTGAGAAACAGACTGCTCTTTTAGTTGAGCTTAATAAGCACAGTCCTGAGTCTGTGATTAAGAGGTTTGAACAA AGAGACCATGCAGTGGATAGCAAAGGAGTCGTCGAGTATCTTAAAGCTCTTGTAGTTACTAATTCTATTGCAGAATATCTTCCTGATGAACAATCTGGAA AGCCTTCCAGTCTTCCTGCTTTGTTGCAAGAATTGAAGCAGCATGCATCAGGGGACACGGATAAGCCCTTAATGAATCCTGGCATATCCGAGAAGCAACC GTTGCATGTGGTGATGGTTGATCCTAAAGTGTCAAACAAGTCACGGTTTGCCCAAGAGCTTATCTCCACTATCTTGTTTACCGTTGCAGTTGGATTGGTT TGGTTCATGGGTGCTGCTGCACTTCAAAAGTATATAGGGAGTCTGGGTGGAATAGGAGCTTCAGGAGCTGGCTCAAGTTCTTCTTATACTCCAAAAGAAC TGAATAAAGAAATCACGCCTGACAAAAATGTTAAAACATTTAAGGATGTTAAAGGCTGTGATGATGCAAAACAAGAACTTGAGGAAGTAGTGGAGTATCT TAAAAACCCAACAAAGTTTACTCGTCTAGGTGGGAAGTTGCCAAAGGGAATTCTTTTGACAGGGGCACCTGGTACAGGGAAAACATTGCTTGCCAAGGCC ATTGCTGGAGAAGCTGGAGTACCTTTTTTCTATAGAGCAGGATCTGAATTTGAGGAAATGTTTGTTGGAGTCGGTGCTCGGCGTGTAAGATCCTTATTTC AAGCAGCTAAAAAAAAGGCTCCATGTATCATTTTTATTGATGAAATTGATGCTGTTGGGTCAACAAGGAAACAATGGGAAGGCCATACAAAGAAGACATT GCATCAACTACTTGTTGAAATGGATGGTTTTGAACAGAATGAGGGAATAATATTGATGGCTGCAACAAACTTGCCTGATATTCTTGATCCTGCTTTGACC AGGCCTGGTAGATTTGACCGTCATATTGTCGTGCCAAATCCTGATGTTAAAGGTCGACAAGAGATTTTGGAGCTCTACCTGCAAGATAAGCCAATGGCCG ATGATGTAGATGTTAAATCAATTGCTCGTGGCACACCAGGCTTCAATGGAGCAGATCTTGCGAACTTGGTAAACATTGCCGCTATTAAAGCTGCTGTAGA AGGTGCTGAGAAGTTATCTGCTACACAATTGGAATTTGCAAAAGACAGGATAATTATGGGGACTGAGCGGAAAACAATGTTCATTTCTGAAGAGTCAAAG AAGTTAACAGCATATCATGAGAGTGGCCATGCTATTGTAGCTTTCAATACTGAGGGTGCACACCCAATTCACAAGGCAACTATAATGCCCCGTGGGTCTG CTTTAGGAATGGTCACCCAGCTTCCTTCAAGTGATGAGACATCAATTAGTAAAAAGCAGTTATTAGCTCGGCTTGATGTTTGTATGGGAGGAAGAGTTGC GGAAGAGCTCGTATTTGGACAGGATTATATCACTACTGGAGCAAGTAGTGATCTTCACACAGCAACAGAGCTTGCGCAGTATATGGTATCAAATTGTGGG ATGAGCGAAGCAATTGGACCAGTACATATTAAAGAAAGATCAAGTTCAGAAATGCAGTCACGTGTTGATGCTGAAGTGGTGAAACTCTTAAGAGAAGCAT ATGCTCGTGTGAAAGCCTTGCTGAAGAAGCATGAGAAGGCATTACATGCACTAGCAAATGCTCTTTTAGAGTACGAAACACTAAGCGCAGAAGAAATAAA GCGAATTCTTCTTCCTTACCAGGAAGGACGGCAACCTGAGCAACAAGAAGTAGAGCAAGAAGAAGGGGAGTTTGTAATGGCTTGA
AA sequence Show only first row Show all	>Potri.012G000700.3 pacid=42783929 polypeptide=Potri.012G000700.3.p locus=Potri.012G000700 ID=Potri.012G000700.3.v4.1 annot-version=v4.1 MTITLQASLLCRPSFSLYSPSKRHSFQHPINSPLSLSKTSFPPSLNLRLRPHSIPCTLQPDNADPLSETVPPISNPEKTQEVVDVVQSNESGRGEVEGHG GNLVEEKEGDGGGVYDRNGRIRMVVFFMGIWATMKNGFQKLFMLLGSYSSNWWPFWKQEKKLEKLIAEAEANPKDVEKQTALLVELNKHSPESVIKRFEQ RDHAVDSKGVVEYLKALVVTNSIAEYLPDEQSGKPSSLPALLQELKQHASGDTDKPLMNPGISEKQPLHVVMVDPKVSNKSRFAQELISTILFTVAVGLV WFMGAAALQKYIGSLGGIGASGAGSSSSYTPKELNKEITPDKNVKTFKDVKGCDDAKQELEEVVEYLKNPTKFTRLGGKLPKGILLTGAPGTGKTLLAKA IAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT RPGRFDRHIVVPNPDVKGRQEILELYLQDKPMADDVDVKSIARGTPGFNGADLANLVNIAAIKAAVEGAEKLSATQLEFAKDRIIMGTERKTMFISEESK KLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSISKKQLLARLDVCMGGRVAEELVFGQDYITTGASSDLHTATELAQYMVSNCG MSEAIGPVHIKERSSSEMQSRVDAEVVKLLREAYARVKALLKKHEKALHALANALLEYETLSAEEIKRILLPYQEGRQPEQQEVEQEEGEFVMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53170		FTSH11	FTSH protease 11 (.1)		Potri.012G000700 [exp]	0	1
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.014G126700 [exp]	1.73	0.9789	RSH1.2
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Potri.015G037800 [exp]	2.44	0.9751	PtrcGR1,Pt-GR.3
AT5G08650			Small GTP-binding protein (.1)		Potri.001G305300 [exp]	2.44	0.9761
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Potri.008G172700 [exp]	2.82	0.9726	GATB.1
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Potri.014G112266 [exp]	5.47	0.9704
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Potri.002G143300 [exp]	6.70	0.9704
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Potri.014G066500 [exp]	7.00	0.9691
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.010G099200 [exp]	7.48	0.9605
AT5G44000			Glutathione S-transferase fami...		Potri.014G192300 [exp]	9.38	0.9544
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Potri.015G069100 [exp]	10.00	0.9652

Compare expression of checked genes

Potri.012G000700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.