Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61690 907 / 0 nucleotidyltransferases (.1) AT3G51620 411 / 4e-126 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G56320 375 / 2e-115 PAP/OAS1 substrate-binding domain superfamily (.1) AT2G40520 332 / 3e-101 Nucleotidyltransferase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G020400 [exp] 1984 / 0 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.002G169732 [exp] 1113 / 0 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.014G097600 [exp] 1099 / 0 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1) Potri.019G128800 [exp] 416 / 3e-128 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.013G154900 [exp] 412 / 1e-126 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.019G056800 [exp] 387 / 7e-119 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1) Potri.011G116501 [exp] 87 / 1e-19 AT3G61690 82 / 6e-19 nucleotidyltransferases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004018 [exp] 894 / 0 AT3G61690 1098 / 0.0 nucleotidyltransferases (.1) Lus10030265 [exp] 884 / 0 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10030266 [exp] 630 / 0 AT3G61690 640 / 0.0 nucleotidyltransferases (.1) Lus10004019 [exp] 558 / 1e-180 AT3G61690 543 / 9e-176 nucleotidyltransferases (.1) Lus10006095 [exp] 436 / 1e-135 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10022746 [exp] 433 / 2e-135 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10025239 [exp] 434 / 2e-134 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10042221 [exp] 357 / 7e-108 AT3G51620 424 / 8e-138 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10034219 [exp] 347 / 7e-105 AT3G56320 458 / 1e-154 PAP/OAS1 substrate-binding domain superfamily (.1) Lus10030537 [exp] 343 / 2e-103 AT3G56320 445 / 3e-149 PAP/OAS1 substrate-binding domain superfamily (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G000900.8 pacid=42782815 polypeptide=Potri.012G000900.8.p locus=Potri.012G000900 ID=Potri.012G000900.8.v4.1 annot-version=v4.1 ATGGGTGGTCTAGAGGACTCGGTCCTGCCTAGTGTCTTTTCCCCTAATGGTCTCTTGCCTAATGAAGCCAACTCTGTCACTCGAGCACTTGAGCTAGAGA GATGGGCAATTGCTGAGGAGAGAACTGCAGAACTTATTGCTTGTATTCAGCCCAATCAACCATCTGAGGAGCGCCGAACTGCTGTTTTAGGCTATGTTCA GCGCCTTATAATGAAATGCTTCCCCTGTCAGGTGTTCACCTTTGGGTCTGTGCCCCTCAAGACCTATCTACCTGATGGAGATATCGATATAACAGTGTTT ACTGAGAGCCAGGATTTGAAGAAAACCTGGGCTGATGAGGTGAAGGATATTTTACAGCACGAGGAGAAGAGTGAGAATGCTGAATTTCATGTAAAAGAGG TTCAGTATATCCAAGCAGAGGTGAAGATCATAAAGTGTCTTGTGGAAAATATTGTAGTAGACATATCCTTTAACCAGCTTGGTGGTTTGTGTACCCTTTG CTTCCTCGAGGAGGTTGACCAACTGATAAGCCAAAACCATCTATTCAAGCGCAGCATTATATTGATTAAAGCTTGGTGTTATTATGAGAGCCGTATTTTG GGTGCTCACCATGGCCTTATTTCAACTTATGCTCTAGAGACATTGGTTTTGTACATATTCCATGTGTTCAATAATAGATTTGCTGGGCCACTTGAGGTAC TCTATCGCTTTCTGGAGTTTTTCAGTAAATTCGATTGGGAACACTTTTGCATTAGTCTCTGGGGCCCAGTTCCAATTAGTTCACTTCCTAATGTGACTGC TCTCTCTCCACGCGAAGATGGTGGACAGATACTCCTCAGCCAATTGTTTCTAGAAGTGTGCAGCTCGGTGTATGCTGTCTTTCCTAGCCAGCAGGAAAAT CAGGAGCAATCCTTTGTTTCCAAATATTTTAATGTCATTGATCCTTTGCGTACAAATAACAATCTTGGCCGTAGTGTCAGTAAGGGTAACTTCTATAGGA TTCGTAGTGCTTTTGCTTTTGGAGCTCAACGTCTGGCCAGATTACTTGACTGTCCAAAAGAGAATCTGCTTGCTGAATTCAACCAGTTTTTCATGAACAC ATGGGATAGGCATTGTAAAGGTCATCGCCCTGATGCTCCAAGTCCCGATCACATTGTTCAACGGCCAATCAAGTCAAATATAATTGATGGTTCTGAGACT TTTAGAAATTACTCAAGCAGCAAAAAGACAAAAGAGGATCCTTCTGGTCATCAATCTAAGGTTGGGGTGATTCATGCTGCTCATGTATCTGATGGTGTTT CCTCCAAGCATGGTAACCACATTTTAAAACTAACGTCCACACCTGGTGATATATCAGCTATATCTGGAAATCTAGGCCAGAGGATGCAGGCCAACTTGAC TAATTCCACAGACTCGGATCATAATAATCAAAATTTAAGATCCAATAGTTTGAATGAGAATGCACATAATGAAAAGACAACAAGTTCCAGAACAGAGTAC TTGGGGAATGAAGGGCATGCTCGATATCAGTTCGCAAGGACTCAATCCAGTCCTGAACTAATTGTTACATCCAGTGAAGTCCCTTCTCGAGGGAGGCGTA ACAAGGCATCAGAGACAGTAAATGGCCAGGCTGCTTCTATGAGGTCACACAATAGTAGGAGGAGAAATTTGGTTCCTGAGGTTTTGGAGAACCATGGTGC AAGATTTTCAACTGAAAATTCACCATCTTCAAGGCATAGCATTGATGCTACTGTTGATTCTACTAGTGCTTCAAATAGCTATTTTGGTGATTCTGGTGAA GGAACCACGGATGACCACCTTTCTCTTTCTGAAACAATGCAGTTGCATCAGGAAGAGCAAGATCGTGTTAACATGGCATCTTTCAGTGGTTATAGTGTCA ACGAACAGGGTCAGATGCCTGTGAATTTAGCTTCTGGTCAACCGCCTTTTGCAATACCACCTGCTAATCTTGGATATGCTCAAAAACAAATGACTGGTAC AGTTCCCATAAATGCTCCTCCTTTTGAGTCCCCTTGGGTGCCGAACATGCATTATCATCCAAGTTTTATTCCATATCCATTTTCCCACTATTTTCCAAGC ATGGGAATGACCTTGGATCAAGAAGTGATGATTGAAAAGGTTGATGCTAAATTGGCATCTACAGAGTTTAGGCAAGACGTGAGCGATCATGGTTTTTGGT CTAAGCCAGTTGCAGATTCTGTAAGAAATCAACAGAAGAACAGAAGCTCCCAATCTCGATTGCAGGAGCATAGGCAACCTTTTGCTTCTGTTGAGTCTAG CCATGTCCATTCAACCCATGTAAGTAGCTCCGGCAGTTTCTCACCAAGGGATCATGAGTTAATTACAGAAGACAGAGATCTGATTAGGGAAAATTACAGT GAGGGTGCTGAATATCAAATACGCAGGGAGTCCGATGCTTATTCATTGGCCAGTTTAAGAATTGTACCCGTTTCACAAGCATCCTCCTCAGGAAGCAAAT CTGAAGATAATGGTGATGGGTCACTTTTGAGGACTCATAAGTCAATGAAGGGTCAGCAGGGAAAGAAATCTTTTCCTTCTACAGATCAACCTATTGCTCA TGGGATGGATAAGAATGAAAGGCAGCATGGAGATGAATCAGCTAATCACATATCTTCTCAGCCAGATGATGATGACAGAGAGTTGATTAGGCTGTCAACC TCAGGCACTGAACTGTCAGAAAGCGTGGTTTCTGGTGTTGGTGCTTCTTCACATGTTTGGACTCATCAAATACCTAGTTATGATCCATCATCAATGAGTA GATCAAATTCAATGCTTCCAGTTGCTCCAATGTTTGTGGGTCCCGAATCGCATCAGAGAACTAACATTAACCATGGAGCACTACCTGTTGCATTTTATCG TGCAGGACCACCGGTGCCTTTTCTAACTACGTATCCATCTTACAACCTTCCAACTGAAGCAGGAACCTCAATTGTATCCACCAGAAAATTCGATAGGGAC GAAGAATTCAATAATTCTCAAAATAATCACTCGAATCAAATTTTAGATTCATCTGAGAATGTTGACCAGTCAGAGAATTTAAATACTTTTACATCTGTGA ACAATGCTTCTTCCTTAGTGCATTCTGAACAGAGCAGATCTGACATTTTGAATAGTGATTTTGCGAGCCACTGGAAGAATCTACAGTATGGGCGGCTTTG CCAAAATGCTCCAAATAAAGATTCCTTGCCCTGTCCATATCCTGTTGTGGTACCACCGATGTACTTCCAGGGACATTTCCCGTGGGATGGTCCTGGAAGA CCTGCAAACATGAATCTCTTCACTCAACATATGAATGGTCCTCATCTTATCCCCGTCTCTCCTGTCCAGCCAGGATCTAGTAGGCAGGCGGGCTTTTATC AACATTATGCAGATGATCTTCCTAGATACCGTACTGGAACTGGAACTTACCTGCCCAATCCGAAATTATCTTTCAGGGATCGACAATCTTCCAATACTAG AAATCATGGGGGAAATTACAACTATGACCGGAAGGACCACCATGATGAAAGGGAAGGAAACTGGAATAACAACCCAAGACCACGATCTGGTGGTCGTGGT CAAAGTCAGAACCAAGGGGAGAAGTCATCCTTTAGGATGGATAGGAGTGCTGCAAATAATCGCCGTTCTGACAGGTCATGGAACTCAAAGCAAGATCCTC TTCCACGATACCATCCCCGCAATTCATTTAGGTTCTCGAACTCCACGGACCGTGGCTCTACCAATGCGGCATATGGCATGTATCCACCAGTACCAGTTGT GACTACTAGTGGAGTTTCTGCATCTGTAGTTATGCTTTATCCGTATGACCAAAACGCGGGCTACAATTCTCCTGATCAGCATCTAGAATTTGTAGGACCA GCTCGTTTCACAGCTGGTAAGGCATCACCGCATCTCCGTGAAGATTCATCAAGAGACATTAATGAGCAACAAGATATCCGAAGAGATTCTGATCTTTCTT CTCCAGATCAGCCATCCTCACCCCGGGTTCACAGGAGGGTTTGA
AA sequence Show only first row Show all	>Potri.012G000900.8 pacid=42782815 polypeptide=Potri.012G000900.8.p locus=Potri.012G000900 ID=Potri.012G000900.8.v4.1 annot-version=v4.1 MGGLEDSVLPSVFSPNGLLPNEANSVTRALELERWAIAEERTAELIACIQPNQPSEERRTAVLGYVQRLIMKCFPCQVFTFGSVPLKTYLPDGDIDITVF TESQDLKKTWADEVKDILQHEEKSENAEFHVKEVQYIQAEVKIIKCLVENIVVDISFNQLGGLCTLCFLEEVDQLISQNHLFKRSIILIKAWCYYESRIL GAHHGLISTYALETLVLYIFHVFNNRFAGPLEVLYRFLEFFSKFDWEHFCISLWGPVPISSLPNVTALSPREDGGQILLSQLFLEVCSSVYAVFPSQQEN QEQSFVSKYFNVIDPLRTNNNLGRSVSKGNFYRIRSAFAFGAQRLARLLDCPKENLLAEFNQFFMNTWDRHCKGHRPDAPSPDHIVQRPIKSNIIDGSET FRNYSSSKKTKEDPSGHQSKVGVIHAAHVSDGVSSKHGNHILKLTSTPGDISAISGNLGQRMQANLTNSTDSDHNNQNLRSNSLNENAHNEKTTSSRTEY LGNEGHARYQFARTQSSPELIVTSSEVPSRGRRNKASETVNGQAASMRSHNSRRRNLVPEVLENHGARFSTENSPSSRHSIDATVDSTSASNSYFGDSGE GTTDDHLSLSETMQLHQEEQDRVNMASFSGYSVNEQGQMPVNLASGQPPFAIPPANLGYAQKQMTGTVPINAPPFESPWVPNMHYHPSFIPYPFSHYFPS MGMTLDQEVMIEKVDAKLASTEFRQDVSDHGFWSKPVADSVRNQQKNRSSQSRLQEHRQPFASVESSHVHSTHVSSSGSFSPRDHELITEDRDLIRENYS EGAEYQIRRESDAYSLASLRIVPVSQASSSGSKSEDNGDGSLLRTHKSMKGQQGKKSFPSTDQPIAHGMDKNERQHGDESANHISSQPDDDDRELIRLST SGTELSESVVSGVGASSHVWTHQIPSYDPSSMSRSNSMLPVAPMFVGPESHQRTNINHGALPVAFYRAGPPVPFLTTYPSYNLPTEAGTSIVSTRKFDRD EEFNNSQNNHSNQILDSSENVDQSENLNTFTSVNNASSLVHSEQSRSDILNSDFASHWKNLQYGRLCQNAPNKDSLPCPYPVVVPPMYFQGHFPWDGPGR PANMNLFTQHMNGPHLIPVSPVQPGSSRQAGFYQHYADDLPRYRTGTGTYLPNPKLSFRDRQSSNTRNHGGNYNYDRKDHHDEREGNWNNNPRPRSGGRG QSQNQGEKSSFRMDRSAANNRRSDRSWNSKQDPLPRYHPRNSFRFSNSTDRGSTNAAYGMYPPVPVVTTSGVSASVVMLYPYDQNAGYNSPDQHLEFVGP ARFTAGKASPHLREDSSRDINEQQDIRRDSDLSSPDQPSSPRVHRRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61690			nucleotidyltransferases (.1)		Potri.012G000900 [exp]	0	1
AT1G24300			GYF domain-containing protein ...		Potri.017G069220 [exp]	1.00	0.9206
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Potri.002G170600 [exp]	2.00	0.8952
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Potri.016G116600 [exp]	3.46	0.8817
AT1G72390			unknown protein		Potri.003G069200 [exp]	4.47	0.8805
AT1G48090			calcium-dependent lipid-bindin...		Potri.008G100600 [exp]	6.48	0.8775
AT1G24300			GYF domain-containing protein ...		Potri.001G326700 [exp]	7.54	0.8832
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Potri.002G119900 [exp]	12.48	0.8608
AT4G01860			Transducin family protein / WD...		Potri.002G189400 [exp]	12.96	0.8455
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.005G114300 [exp]	14.49	0.8666
AT4G11270			Transducin/WD40 repeat-like su...		Potri.003G132900 [exp]	14.69	0.8487

Compare expression of checked genes

Potri.012G000900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.