Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35910 335 / 8e-114 TPPD trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G51460 332 / 3e-112 ATTPPA Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT1G78090 332 / 3e-112 ATTPPB Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) AT4G22590 326 / 6e-110 TPPG trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G39770 322 / 5e-109 TPPH trehalose-6-phosphate phosphatase H, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G10100 322 / 1e-108 TPPI trehalose-6-phosphate phosphatase I, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G22210 320 / 2e-108 TPPC trehalose-6-phosphate phosphatase C, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G22190 321 / 3e-108 TPPE trehalose-6-phosphate phosphatase E, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G65140 318 / 6e-107 TPPJ trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT4G12430 311 / 1e-104 TPPF trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G020300 [exp] 629 / 0 AT1G78090 333 / 4e-113 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Potri.005G077200 [exp] 345 / 2e-117 AT5G65140 545 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.007G090900 [exp] 344 / 5e-117 AT5G65140 548 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.012G126100 [exp] 343 / 2e-116 AT5G51460 526 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.015G126900 [exp] 342 / 2e-116 AT5G51460 531 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.002G094500 [exp] 342 / 3e-116 AT5G65140 489 / 3e-174 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.001G120500 [exp] 324 / 4e-109 AT4G22590 501 / 2e-178 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G112400 [exp] 320 / 1e-107 AT4G12430 485 / 3e-172 trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.005G166700 [exp] 243 / 1e-78 AT5G65140 362 / 8e-126 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019010 [exp] 461 / 3e-163 AT1G78090 338 / 6e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Lus10039339 [exp] 441 / 8e-156 AT1G78090 339 / 2e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Lus10027208 [exp] 342 / 3e-116 AT5G51460 515 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10019666 [exp] 336 / 2e-114 AT5G65140 483 / 9e-173 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10038921 [exp] 332 / 2e-111 AT5G51460 488 / 2e-172 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10032244 [exp] 329 / 6e-111 AT4G22590 531 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10031723 [exp] 327 / 2e-110 AT5G51460 511 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10024607 [exp] 326 / 7e-110 AT4G22590 534 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10031146 [exp] 323 / 6e-109 AT5G51460 517 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10000687 [exp] 274 / 9e-90 AT5G65140 451 / 3e-159 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF02358 [poplar] [flax] Trehalose_PPase Trehalose-phosphatase
Representative CDS sequence Show only first row Show all	>Potri.012G001000.6 pacid=42783019 polypeptide=Potri.012G001000.6.p locus=Potri.012G001000 ID=Potri.012G001000.6.v4.1 annot-version=v4.1 ATGTTTAAGAGAAATTTTGCAAAGCTTAACCAGGCCATGGGATTTCAAAGATCTTCCAACAGGCAAAAGGTGCAGCCTGGTGTTAGTGATCTCTCTTCAA ATGAGAGAGCACCAAATTCGTGTCATCCTGTAATCAATGGATCAGCTGTTTCTGATGATGCAAATTACAGTTCATGGATGGTGGACCATCCTTCTGCATT GACCTCATTTGATCAGATGATGAAAGATGCAAGGGGGAAGAAGATCGTCGTGTTTTTAGACTACGACGGAACTCTCTCGCCGATTGTAAATGATCCTGAT CGTGCTTTCATGTCTGATGAGATGCGTGCAGCAGTTCGTGAAGTTGCAAAATACTTTCCAACAGCTATAATCAGTGGTAGAAGCAGAGATAAGGTGAAAG GATTTGTTCAGTTGAATAACATATATTATGCTGGAAGCCATGGGATGGACATTATGGCACCACCTAGGCCTGTTAGGTCTAGTGATGGGAAATATCATAC TGTATCCCTTGACAGAAAGGGCAATGAAGCTGTCTTTCAACCTGCTCAGAAATTCTTACCTTCAATTCAAAAGATTCTGAAAGAACTGGAAGAGGCAATT ATGAAAATACAAGGTGCCAGGGTAGAAAACAACAGATTTTGTGTCTCTGTACATTTTCGACAAGTTCGAGATGAGGATTATGGGATCTTAGAGGAGAAGG TGAAGTCTATTCTGAAACACTATCCAGACTTTCGTTTGGGTTGGGGTAAGAAGGTTATGGAAATACGACCATCAATAGAATGGGACAAAGGCAACGCCCT AGAATATTTGCTCGATACTCTAGGGTTAGGCAACTGCACCGATGTTCTCCCGGTTTATATCGGAGATGACCGGACAGATGAAGATGCTTTCAAGGTGATT CAAAAGAGAGGCCAAGGGTATCCAATCGTGGTAGCGTCCAGTCCGAAGGATACGAAAGCTTCCTACTCCCTCCATGACCCGTCGGAAGTCTTGACTTTCT TGCTGCGTCTAGCAAGGTGGAGGAAGGCCTCTAGTTCGAGCAGGTCACTGTCTCAGATCTGGGGCGTGGGTAGCTAA
AA sequence Show only first row Show all	>Potri.012G001000.6 pacid=42783019 polypeptide=Potri.012G001000.6.p locus=Potri.012G001000 ID=Potri.012G001000.6.v4.1 annot-version=v4.1 MFKRNFAKLNQAMGFQRSSNRQKVQPGVSDLSSNERAPNSCHPVINGSAVSDDANYSSWMVDHPSALTSFDQMMKDARGKKIVVFLDYDGTLSPIVNDPD RAFMSDEMRAAVREVAKYFPTAIISGRSRDKVKGFVQLNNIYYAGSHGMDIMAPPRPVRSSDGKYHTVSLDRKGNEAVFQPAQKFLPSIQKILKELEEAI MKIQGARVENNRFCVSVHFRQVRDEDYGILEEKVKSILKHYPDFRLGWGKKVMEIRPSIEWDKGNALEYLLDTLGLGNCTDVLPVYIGDDRTDEDAFKVI QKRGQGYPIVVASSPKDTKASYSLHDPSEVLTFLLRLARWRKASSSSRSLSQIWGVGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G35910		TPPD	trehalose-6-phosphate phosphat...		Potri.012G001000 [exp]	0	1
AT2G38870			Serine protease inhibitor, pot...		Potri.010G075400 [exp]	1.73	0.9630	BGIT.1
AT1G05450			Bifunctional inhibitor/lipid-t...		Potri.010G085200 [exp]	2.44	0.9616
AT2G38870			Serine protease inhibitor, pot...		Potri.006G212200 [exp]	2.44	0.9626
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.010G085400 [exp]	4.47	0.9538
AT1G56600		ATGOLS2	galactinol synthase 2 (.1)		Potri.005G006800 [exp]	7.74	0.9505
AT4G05100	MYB	ATMYB74	myb domain protein 74 (.1)		Potri.019G118200 [exp]	10.19	0.9374
					Potri.012G110750 [exp]	10.29	0.8744
					Potri.001G472101 [exp]	10.48	0.9396
AT5G43580		UPI	UNUSUAL SERINE PROTEASE INHIBI...		Potri.010G075501 [exp]	10.72	0.9230
					Potri.016G047700 [exp]	11.48	0.9374

Compare expression of checked genes

Potri.012G001000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.