Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22370 475 / 4e-169 AtHSR3, ATAOX1A, AOX1A hyper-sensitivity-related 3, alternative oxidase 1A (.1) AT3G22360 456 / 3e-162 AOX1B alternative oxidase 1B (.1) AT3G27620 444 / 4e-157 AOX1C alternative oxidase 1C (.1) AT1G32350 399 / 7e-140 AOX1D alternative oxidase 1D (.1) AT5G64210 386 / 3e-134 AOX2 alternative oxidase 2 (.1) AT4G22260 63 / 7e-11 IM1, IM IMMUTANS, Alternative oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G001500 [exp] 613 / 0 AT3G22370 518 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.015G019800 [exp] 585 / 0 AT3G22370 526 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.003G103900 [exp] 410 / 4e-144 AT1G32350 433 / 1e-153 alternative oxidase 1D (.1) Potri.011G021800 [exp] 61 / 5e-10 AT4G22260 457 / 7e-162 IMMUTANS, Alternative oxidase family protein (.1) Potri.004G002600 [exp] 57 / 7e-09 AT4G22260 424 / 6e-149 IMMUTANS, Alternative oxidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035670 [exp] 449 / 1e-158 AT3G22370 519 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Lus10005372 [exp] 401 / 5e-140 AT5G64210 453 / 2e-160 alternative oxidase 2 (.1) Lus10020523 [exp] 401 / 6e-140 AT5G64210 462 / 4e-164 alternative oxidase 2 (.1) Lus10002872 [exp] 61 / 5e-10 AT4G22260 466 / 1e-163 IMMUTANS, Alternative oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [poplar] [flax] Ferritin PF01786 [poplar] [flax] AOX Alternative oxidase
Representative CDS sequence Show only first row Show all	>Potri.012G001600.1 pacid=42782634 polypeptide=Potri.012G001600.1.p locus=Potri.012G001600 ID=Potri.012G001600.1.v4.1 annot-version=v4.1 ATGTTGATGATGGCAGGTCGCGGAGGAGCCACCAAGTTGGCGAGTTCCATGATGTTGGTTGCACGTTGTTTCTCAACAGCCACCGCCCGTGGGATGTTAG TCAAAGAGGCTGTCCATGCTAAAGCGATGGGGTTTCATGGGGATGTTGTGCGTGGGAATGTTGGTGAATTTTTGGTTCGGGGTTCGGTGTTTGGTTTGAG GCATGGGAGTACTGCGAGTTTTAGTGAGAAGGATCAGCAACAGAATGTTCAGCTGGTCGCGGAGGGTGGTGGTGGTGATAAAGAGGAGAAGAAGGAGAGT ACTGTTAGTTACTGGGGTGTTCCTCCTAGTAGGGTTACTAAAGAGGATGGAACTGAGTGGAAGTGGAATTCTTTTAGACCATGGGAGACATATTCTGCTG ATTTATCAATTAATCTGACGAAGCATCATGCCCCAGTCACTTTATTGGACAGAATGGCTTATTGGACTGTCAAGTCTCTCAGATGGCCCACTGATTTGTT CTTTCAGAGAAGGTATGGCTGCCGCGCAATGATGTTGGAGACTGTGGCAGCAGTGCCAGGAATGGTAGGTGGCATGCTGCTGCACTGCAGGTCCTTGAGG CGATTTGAGCACAGTGGAGGATGGATCAAAGCATTACTTGAAGAAGCTGAAAATGAGCGAATGCATCTCATGACATTCATGGAGGTGTCAAATCCCAGGT GGTATGAGCGTGCTCTAGTGTTTACTGTCCAAGGTGTTTTCTTCAATGCTTACTTCCTTGGCTACCTCATCTCCCCGAAATTCGCTCATCGCATGGTGGG GTATCTCGAGGAGGAAGCTATTCACTCTTACACCGAGTTCCTGAAGGAGTTGGACAAAGGCAACATTAAGAATGTTCCTGCTCCTGCCATTGCTATTGAT TACTGGCGCTTGCCTCCTAACTCCACCCTCCGCGATGTTGTTGTGGCTGTTAGAGCTGATGAAGCACATCACCGCGATGTGAATCACTTCGCATCGGACA TACACTATCAAGGACGCGAACTGAAGGAAGCTCCTGCTCCTATCGGTTACCACTAA
AA sequence Show only first row Show all	>Potri.012G001600.1 pacid=42782634 polypeptide=Potri.012G001600.1.p locus=Potri.012G001600 ID=Potri.012G001600.1.v4.1 annot-version=v4.1 MLMMAGRGGATKLASSMMLVARCFSTATARGMLVKEAVHAKAMGFHGDVVRGNVGEFLVRGSVFGLRHGSTASFSEKDQQQNVQLVAEGGGGDKEEKKES TVSYWGVPPSRVTKEDGTEWKWNSFRPWETYSADLSINLTKHHAPVTLLDRMAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCRSLR RFEHSGGWIKALLEEAENERMHLMTFMEVSNPRWYERALVFTVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIKNVPAPAIAID YWRLPPNSTLRDVVVAVRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Potri.012G001600 [exp]	0	1
AT5G59520		ZIP2	ZRT/IRT-like protein 2 (.1)		Potri.009G034600 [exp]	1.00	0.8138
					Potri.014G065200 [exp]	15.49	0.7832
					Potri.001G259204 [exp]	21.16	0.7811
AT5G35405			Protein of unknown function (D...		Potri.002G229600 [exp]	33.24	0.7758
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.009G098400 [exp]	34.29	0.7785
AT5G35405			Protein of unknown function (D...		Potri.002G229650 [exp]	34.49	0.7758
AT3G11930			Adenine nucleotide alpha hydro...		Potri.006G198200 [exp]	35.70	0.7758
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.001G228500 [exp]	37.88	0.7805
AT3G12320			unknown protein		Potri.003G193800 [exp]	43.95	0.7665
					Potri.009G102850 [exp]	48.10	0.7571

Compare expression of checked genes

Potri.012G001600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.