Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46420 165 / 3e-48 Plant protein 1589 of unknown function (.1.2) AT3G61700 162 / 3e-47 Plant protein 1589 of unknown function (.1.2) AT3G10250 100 / 4e-24 Plant protein 1589 of unknown function (.1.2) AT5G04090 97 / 3e-23 Plant protein 1589 of unknown function (.1.2) AT3G55240 58 / 8e-11 Plant protein 1589 of unknown function (.1) AT1G10657 57 / 3e-10 Plant protein 1589 of unknown function (.1.2.3.4) AT5G02580 55 / 1e-09 Plant protein 1589 of unknown function (.1.2) AT3G28990 54 / 2e-09 Plant protein 1589 of unknown function (.1) AT2G29605 52 / 2e-07 Plant protein 1589 of unknown function (.1) AT1G49700 49 / 2e-06 Plant protein 1589 of unknown function (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G019500 [exp] 400 / 6e-141 AT3G61700 161 / 1e-46 Plant protein 1589 of unknown function (.1.2) Potri.002G169900 [exp] 192 / 1e-58 AT2G46420 500 / 1e-178 Plant protein 1589 of unknown function (.1.2) Potri.014G097800 [exp] 181 / 3e-54 AT2G46420 503 / 5e-180 Plant protein 1589 of unknown function (.1.2) Potri.012G001900 [exp] 152 / 1e-43 AT3G61700 82 / 2e-17 Plant protein 1589 of unknown function (.1.2) Potri.015G014550 [exp] 129 / 1e-33 AT3G10250 92 / 2e-20 Plant protein 1589 of unknown function (.1.2) Potri.016G038100 [exp] 99 / 1e-23 AT3G10250 381 / 5e-133 Plant protein 1589 of unknown function (.1.2) Potri.006G041200 [exp] 99 / 2e-23 AT3G10250 396 / 4e-139 Plant protein 1589 of unknown function (.1.2) Potri.010G042300 [exp] 65 / 4e-13 AT1G10657 119 / 1e-36 Plant protein 1589 of unknown function (.1.2.3.4) Potri.008G189100 [exp] 64 / 4e-13 AT1G10657 122 / 8e-38 Plant protein 1589 of unknown function (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019011 [exp] 131 / 1e-35 AT3G61700 212 / 4e-66 Plant protein 1589 of unknown function (.1.2) Lus10004016 [exp] 127 / 5e-35 AT3G61700 253 / 3e-83 Plant protein 1589 of unknown function (.1.2) Lus10030264 [exp] 131 / 1e-34 AT2G46420 346 / 4e-117 Plant protein 1589 of unknown function (.1.2) Lus10039340 [exp] 119 / 4e-31 AT3G61700 182 / 6e-55 Plant protein 1589 of unknown function (.1.2) Lus10031001 [exp] 97 / 5e-23 AT3G10250 392 / 3e-137 Plant protein 1589 of unknown function (.1.2) Lus10035397 [exp] 98 / 3e-22 AT3G23270 526 / 2e-171 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10025300 [exp] 53 / 9e-09 AT5G02580 115 / 5e-35 Plant protein 1589 of unknown function (.1.2) Lus10024432 [exp] 52 / 2e-08 AT5G02580 112 / 1e-33 Plant protein 1589 of unknown function (.1.2) Lus10004015 [exp] 42 / 0.0002 AT2G46420 229 / 1e-75 Plant protein 1589 of unknown function (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09713 [poplar] [flax] A_thal_3526 Plant protein 1589 of unknown function (A_thal_3526)
Representative CDS sequence Show only first row Show all	>Potri.012G001700.4 pacid=42784207 polypeptide=Potri.012G001700.4.p locus=Potri.012G001700 ID=Potri.012G001700.4.v4.1 annot-version=v4.1 ATGAGGGTGAAAGAGGATTCGGAAGAAGCAAGTTTCTCAACACTCACATCTCGTGAGCCACCAAGAAACCAACAAAATATCGCATCTGGGGCGGGTACCG GTTCAGTGCCTATTACTAGCAACAACAACACAGCTGCTCTCTGTAGAGAAATTAGAATTGTCCAAGATTTGATTGAAAGGTGTCTGCAGCTGTTTTTGGA TAAAGATGAAGTGGTTAAGACACTCTTTGAACAAGCAAGAATTCAGCCTGACTTTACAAGAATAGTATGGAATAGATTGGAGCAAGAAAATGCAGAATTT TTTAAGGCCTATTGCATAAAGTTAATTCTGAAGAAACAAATTTCTGTGTTCAATGAATTACTTGAGAAGCACCACCATCTGCTTAATTACGCTGCACCTC TAGAGTATCCCTTGGCTCCCATGCAGGAAGGCGTTCAGCACATGCCAGTTGACAATCTACATAATGGATATACCCTTCTGCAGCAGCATCCAATTCCATC AACTGTTCATCCCCAGAATGATTCCATGGGAACCTTTTCCAACTATGATTTGGTTTATGAAAACCCTGAGAGTGGGAATTTCCACTCAACTCGTTTGAAT TATGGGGGATGGATGCCAATGGACAATAACACAACCGATATAGCACCTACTCAACCTTTTATTAAGTCGGAGATTCCAAGTCCTGTATCAGTTGCACCCT TTGATCAATATCCTTTCGTTCCAAGAGAGATGCCAGAGAGCGTGGACCCTTCATCTTTTGACTTTGCAGAGTTATCTCATGTGCGAAGTCCGGGGCAGGT TCTACTTCAACCTGCTAATGCTGGCTTCAATAACTTGGCAGATATAGGAGAATATTCGGTTTCTACTGGATTGCGTGATCCTTCAGAGCAAAATGACAAT GTTGACAAGTTCTTTGCCGATACCATTCCTGCTACACACTCTCAATCATAA
AA sequence Show only first row Show all	>Potri.012G001700.4 pacid=42784207 polypeptide=Potri.012G001700.4.p locus=Potri.012G001700 ID=Potri.012G001700.4.v4.1 annot-version=v4.1 MRVKEDSEEASFSTLTSREPPRNQQNIASGAGTGSVPITSNNNTAALCREIRIVQDLIERCLQLFLDKDEVVKTLFEQARIQPDFTRIVWNRLEQENAEF FKAYCIKLILKKQISVFNELLEKHHHLLNYAAPLEYPLAPMQEGVQHMPVDNLHNGYTLLQQHPIPSTVHPQNDSMGTFSNYDLVYENPESGNFHSTRLN YGGWMPMDNNTTDIAPTQPFIKSEIPSPVSVAPFDQYPFVPREMPESVDPSSFDFAELSHVRSPGQVLLQPANAGFNNLADIGEYSVSTGLRDPSEQNDN VDKFFADTIPATHSQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46420			Plant protein 1589 of unknown ...		Potri.012G001700 [exp]	0	1
AT2G33550	Trihelix		Homeodomain-like superfamily p...		Potri.001G066900 [exp]	6.24	0.7892
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412454 [exp]	8.36	0.7757
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Potri.009G052900 [exp]	9.05	0.7946	HAP2.5
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411100 [exp]	13.26	0.7709
AT1G79740			hAT transposon superfamily (.1...		Potri.018G135702 [exp]	16.00	0.7891
AT2G28230			TATA-binding related factor (T...		Potri.006G143400 [exp]	16.61	0.7691
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G258100 [exp]	20.78	0.7758
AT1G25420			Regulator of Vps4 activity in ...		Potri.010G124100 [exp]	24.53	0.7562
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.005G100900 [exp]	26.73	0.7603
AT2G31130			unknown protein		Potri.004G055300 [exp]	26.83	0.7784

Compare expression of checked genes

Potri.012G001700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.