Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CNGC.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53130 1087 / 0 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT4G01010 833 / 0 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT1G01340 827 / 0 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT2G46430 782 / 0 CNGC3.C, ATCNGC3 cyclic nucleotide gated channel 3 (.1.2) AT2G23980 749 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT4G30560 743 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT5G57940 741 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT1G19780 701 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT1G15990 686 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT2G28260 661 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G019100 [exp] 1287 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.002G170000 [exp] 894 / 0 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.014G097900 [exp] 878 / 0 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.018G106100 [exp] 743 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.003G183000 [exp] 711 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.001G043900 [exp] 702 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.009G010700 [exp] 674 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G097600 [exp] 648 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.017G067000 [exp] 621 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019014 [exp] 1133 / 0 AT5G53130 1122 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10003395 [exp] 1102 / 0 AT5G53130 1117 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10014925 [exp] 1014 / 0 AT5G53130 1031 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10038815 [exp] 924 / 0 AT5G53130 971 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10036260 [exp] 736 / 0 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10022155 [exp] 716 / 0 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10041662 [exp] 712 / 0 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10024073 [exp] 705 / 0 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10021461 [exp] 674 / 0 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10015510 [exp] 650 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein
Representative CDS sequence Show only first row Show all	>Potri.012G002200.3 pacid=42783767 polypeptide=Potri.012G002200.3.p locus=Potri.012G002200 ID=Potri.012G002200.3.v4.1 annot-version=v4.1 ATGAATCATCCACAAGAGAAGTTTGTGAGGTTTCAAGATTGGAAGTCAGAGAAAAGTACTGAAGGGAATTATTCTGCAAGTAATGTTATGTATCCAGGAA AAATTAGAACCACAATAAGCTCAGTTTCTGAGAAGTTTCAAAGAGGATTGGAATCTGGCTCTTCAAGCTTTAACAAGATTAGAAAATCATTAAAATCATA TTCATTCAACAGTGAGGTTGCTTCGAGAAAGAAAATTCTTGACCCACAAGGGCATTTCCTTCAAAAGTGGAACAAGATATTCGTACTGTCATGCTTGATT GCTGTTTCACTGGATCCTTTGTTTTTCTATGTCCCTGTGATTGATGATGGTAAGAAGTGTCTTTCTTTGGACCGCACGATGGAGATTACAGCAAGTGTTT TGCGTTCTTTCACGGATATCTTTTATATACTACATATTATCTTTCAATTTCGCACTGGATTCATTGCTCCCTCATCCCGGGTATTTGGAAGAGGTGTTTT GGTCGAGGATACTTGGGCAATAGCTAAGAGATATCTGTCATCATATTTCTTAATTGACATTCTCGCAGTTCTTCCACTCCCGCAGGTGGTGATTTTAATT ATCATTCGAAAAATGGCCGGCTCAAGAAACTTGAATACAAAGAACTTGTTAAAATTTGTTGTCATCTTCCAGTATGTTCCAAGGTTTATGCGAATTTATC CATTATATAAGGAAGTTACAACTTCTGGCATCCTTACAGAAACTGCATGGGCTGGAGCTGCATTTAATCTTTTTCTGTATATGCTTGCGAGTCATGTACT TGGAGCCTTTTGGTATTTGTTTTCAATAGAACGAGAAACAAATTGTTGGAGACAAGCCTGTGGGAAACATGCTGGATGCAGCCGTGAACTTTTGTTTTGT GACACAGCTGGTAGTGTTGGAAATCTCTCATTTCTGGATAATTATTGCCCGATAATAACCCCAAATGAAACAGTCTTCAATTTTGGAATATTCCTTGATG CCCTTCAGTCTGGTGTTGTTTCGTCGTCCATGGATTTTCCACAGAAGTTCTTTTACTGTTTTTGGTGGGGCCTGCAAAACCTGAGTTCTCTTGGTCAAAA TCTTAAAACAAGTACCTACGTTTGGGAAATCTGCTTTGCAGTTTTCATTTCTATCTCCGGCTTGGTACTATTTTCATTTCTCATTGGAAATATGCAGACT TATTTGCAATCCACAACTACAAGATTGGAGGAAATGAGAATCAAAAGAAGAGATGCAGAACAGTGGATGTCCCATCGCTTGCTTCCTGATAGTATAAGGG AACGGATCAGACGGTATGAACAATACAGATGGCAAGAAACTAGAGGTGTTGATGAAGAGATGCTTGTTCATAATCTTCCCAAGGACCTTAGAAGGGACAT TAAACGTCACCTCTGCTTGGCTCTGCTCATGAGAGTGCCGATGTTTGAAAAAATGGACGAACAATTACTAGATGCATTGTGTGACCGTCTCAAGCCAGTC CTATACACAGAGGAGAGCTACATTGTTCGTGAGGGAGACCCAGTTGATGAAATGCTCTTTGTTATGCGGGGCAAGCTATTAACCATAACCACCAATGGTG GAAGAACTGGCTTCTTCAACTCTGAGTACCTTAAGGCCGGTGACTTCTGTGGAGAGGAACTTCTCACATGGGCTTTAGATCCCCAATCCTCTTCTAATCT GCCCATCTCAACTAGAACAGTTAGAACCATTACAGAAGTTGAAGCCTTCGCTCTAATGGCTGATGACTTGAAATTTGTTGCTTCTCAATTCCGGCGGCTT CACAGTAAGCAGCTCCGACACACTTTCAGGTTTTACTCGCAGCAGTGGAGAACATGGGCTGCTTGTTTTATACAGGCTGCATGGCGTCGCTATAGTAAAA AGAAGCTCGAAGAGTCTCTCCGGCAAGAGGAAAATAGATTGCAAGATGCATTAGCGAAAGCTAACGAGAGTTCACCAAGTTTAGGTGCTACAATATATGC CTCAAGATTTGCTGCTAACATTTTGCGTGCTCTACGACGCGGTGGCAATCGCAAGGCAAGGGTGCCAGATAGAGTTCCACCCATGCTGCTGCAGAAGCCA GCAGAGCCTGATTTTACTTCTGAAGAATGA
AA sequence Show only first row Show all	>Potri.012G002200.3 pacid=42783767 polypeptide=Potri.012G002200.3.p locus=Potri.012G002200 ID=Potri.012G002200.3.v4.1 annot-version=v4.1 MNHPQEKFVRFQDWKSEKSTEGNYSASNVMYPGKIRTTISSVSEKFQRGLESGSSSFNKIRKSLKSYSFNSEVASRKKILDPQGHFLQKWNKIFVLSCLI AVSLDPLFFYVPVIDDGKKCLSLDRTMEITASVLRSFTDIFYILHIIFQFRTGFIAPSSRVFGRGVLVEDTWAIAKRYLSSYFLIDILAVLPLPQVVILI IIRKMAGSRNLNTKNLLKFVVIFQYVPRFMRIYPLYKEVTTSGILTETAWAGAAFNLFLYMLASHVLGAFWYLFSIERETNCWRQACGKHAGCSRELLFC DTAGSVGNLSFLDNYCPIITPNETVFNFGIFLDALQSGVVSSSMDFPQKFFYCFWWGLQNLSSLGQNLKTSTYVWEICFAVFISISGLVLFSFLIGNMQT YLQSTTTRLEEMRIKRRDAEQWMSHRLLPDSIRERIRRYEQYRWQETRGVDEEMLVHNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLKPV LYTEESYIVREGDPVDEMLFVMRGKLLTITTNGGRTGFFNSEYLKAGDFCGEELLTWALDPQSSSNLPISTRTVRTITEVEAFALMADDLKFVASQFRRL HSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLRQEENRLQDALAKANESSPSLGATIYASRFAANILRALRRGGNRKARVPDRVPPMLLQKP AEPDFTSEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G002200 [exp]	0	1	Pt-CNGC.2
AT1G14670			Endomembrane protein 70 protei...		Potri.012G042300 [exp]	1.73	0.7909
AT1G34470			Protein of unknown function (D...		Potri.001G253100 [exp]	2.44	0.7857
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Potri.016G085500 [exp]	4.00	0.8195
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Potri.012G138300 [exp]	4.89	0.7832	MBD912
AT3G18620			DHHC-type zinc finger family p...		Potri.007G070600 [exp]	4.89	0.7465
AT5G12200		PYD2	pyrimidine 2 (.1)		Potri.001G273400 [exp]	5.09	0.8028
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.017G094400 [exp]	6.70	0.7831
AT5G61010		ATEXO70E2	exocyst subunit exo70 family p...		Potri.015G058200 [exp]	7.14	0.7626
AT5G57035			U-box domain-containing protei...		Potri.006G147000 [exp]	7.48	0.7847
AT1G67000			Protein kinase superfamily pro...		Potri.008G125500 [exp]	8.36	0.7802

Compare expression of checked genes

Potri.012G002200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.