Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49160 799 / 0 pyruvate kinase family protein (.1) AT1G32440 95 / 6e-20 PKP3 plastidial pyruvate kinase 3 (.1) AT4G26390 91 / 4e-19 Pyruvate kinase family protein (.1) AT5G56350 90 / 1e-18 Pyruvate kinase family protein (.1) AT3G55810 89 / 2e-18 Pyruvate kinase family protein (.1) AT3G55650 89 / 2e-18 Pyruvate kinase family protein (.1) AT5G63680 88 / 5e-18 Pyruvate kinase family protein (.1) AT5G08570 87 / 1e-17 Pyruvate kinase family protein (.1) AT3G25960 85 / 5e-17 Pyruvate kinase family protein (.1) AT3G22960 85 / 9e-17 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G223100 [exp] 91 / 1e-18 AT5G56350 915 / 0.0 Pyruvate kinase family protein (.1) Potri.001G001600 [exp] 89 / 3e-18 AT5G56350 913 / 0.0 Pyruvate kinase family protein (.1) Potri.001G289300 [exp] 87 / 1e-17 AT3G22960 623 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 87 / 1e-17 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.001G145300 [exp] 87 / 1e-17 AT1G32440 846 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.013G060400 [exp] 86 / 2e-17 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.009G084700 [exp] 85 / 7e-17 AT3G22960 620 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.010G254900 [exp] 84 / 9e-17 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.003G088700 [exp] 84 / 1e-16 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003439 [exp] 92 / 3e-19 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10013396 [exp] 91 / 1e-18 AT5G56350 931 / 0.0 Pyruvate kinase family protein (.1) Lus10012445 [exp] 91 / 1e-18 AT3G22960 479 / 7e-163 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10010329 [exp] 89 / 4e-18 AT5G56350 930 / 0.0 Pyruvate kinase family protein (.1) Lus10033757 [exp] 89 / 5e-18 AT3G22960 429 / 5e-145 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10012446 [exp] 89 / 6e-18 AT3G22960 616 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10026875 [exp] 87 / 2e-17 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10041003 [exp] 87 / 2e-17 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1) Lus10000672 [exp] 86 / 3e-17 AT1G32440 830 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10006633 [exp] 86 / 5e-17 AT3G22960 920 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [poplar] [flax] PK_TIM PF00224 [poplar] [flax] PK Pyruvate kinase, barrel domain
Representative CDS sequence Show only first row Show all	>Potri.012G002500.1 pacid=42784058 polypeptide=Potri.012G002500.1.p locus=Potri.012G002500 ID=Potri.012G002500.1.v4.1 annot-version=v4.1 ATGTCAGGTGTTAGTTCACTTTCAGCTAGTCTAGTCACAAATCCAACTTCAAGACTTCCTCATCATGCCATTCAATGTACTGAGTTCCTGGGGTTTGTGC CTAAGGGGAGGCCTATAAATGTGACTTTGAGTTGGAGGTTTCCTGTTAGAACACAAGTTGGTGTAATTCAGTTGTTTGGTTTACATAAGACGAAGTTGAA ACTGAAAAGTTTTGCCTTTTCTGTTCCTAATGAGAATGATCAAGCTGGATTATGTGATTCGGGCACTTGCACTGGCGATGAAATGCCTGTTCCTTTCGAA AATGATGAGAATTTGAAGGGCCCAGATGAAGAAATTGTTTCTTCTGTTTTGGGTACAGAAGTGGATTCATTGCGGACTGTTGAGCATCTGGGCAGTAAAG GGAGTGTTGTTGAAAAGTTAAAGGCTGTTTACTTGCATGTACTGGCATCTGAACAATGGAATGCTTCTCAACTCAAATTGTGTCACAGAAATTACTTGGA TAGTGCAACAAACTTGATACATTATCTGGCTTTGAGGTGCCTTGACATTCAACAACTGAAAGAAGATCTCACTTTGCTCGGTCTCATGAATTTGGAGACT ATCAATTTGCACGTTCTTTCAAGTCTTAATGCCAGTATTCGACTTTTGGAGGCCTTGAAATCAAATTCTTTGAACCCCAACGATAGTGTTAGTGAAGGAA TTTTCACAGAGAAAAGATTAGACCCACAGAATGATGGAAAATTCACAATACAAGCAATGAGGAAGAAGGCATCCTCCAACAGTGAGTTCTTATTGGGCCG TCTACAAGATGGCAGAACTACTCACATCATGGTAACAGTTGGCCAAGAAGCTACCGAGAATGAAACATTTATCACTGATCTCATCAAGGCAGGTACTTCC ATTATTCGCATCAATTGTGCTCATGGAAATCCTAGCATCTGGAGTGAGATAATCAAAAGAGTGAAAGAAAGTTCCCAGATGCTGGAAAAACCTTGTCGAA TTCTCATGGATTTAGCAGGACCAAAGCTCCGAACAGGGAAGCTGAAGTCTGGTCCATCTGTAGTCAAAATATCTCCCAAGAAAAATGCTTCAGGAAATGT GGTATTCCCTGCTCAAGTTTGGTTGTCTCACAGAGAAGCAGGTACTCCTCCTACTCATTTGTCTCCGGATGCAGTCCTGTTCGTAGATGACCAACAATTT CTCAGTGAGCTTGAGATAGGTGACACTATAAGATTCAGTGATGCTAGAGGGAAGAAAAGGCTGCTTCGAATTTCTAAAAAAATTCATGTTTTCTCTGGTA CTGGATGTGTGGCTGAGTGTACTAGGACTGCTTATGTTCAGTCCGGAACAGAACTCCACTTGAAGGGAAAGAAAAGGAGGTCACAACTTGGGAAAGTAGT GGATGTCCCAGCTATAGAGCCGTATATCAGACTGAGAGTTGGAGACTTGCTAGTCATTTCACGATGCAGCTCTTCCGAACTAGATGAAATGCATGTGTCT ATGAGTGGCACTCATAAGATCACTTGCTCTTCTGGCTATCTGTTTGATTCAGTCACACCTGGTGAACCAATTGCTTTTGATGATGGAAAGATTTGGGGAG TCATAAAAGGAACAGATATATCTGAAATCATTGTCTCTATCACCCATGCTAGTCCAAAAGGCAGTAAACTTGGATCCGACAAATCCATTAATATCCCAGA GAGTAATATTCGGTTTGAAGGCCTGACATCAAAGGATCTTATGGATCTTGAATTTGTTGCTGCCCATGCTGATATTGTAGGTGTTTCTTTTGTTCGAGAT ATTCATGACATTGTTGTGCTCCGCCAAGAACTGGAGAAGCGCAAACTTCAAAACCTTGGGGTTATTTTGAAAATCGAGACAAAGAGTGGGTTTGAGAATT TGCCTCTTATGCTGTTGGAGGCAATGAAGTCCTCAAATCCTTTAGGGGTCATGATTGCTAGAGGAGATCTAGCCGTGGAGTGTGGATGGGAAATGTTGGC TGATATGCAAGAAGAAATTATTTCTCTTTGCGGTGCCGCCCATATACCAGTTGTTTGGGCAACTCAGGTCTTAGAGTCGCTTGTGAAGTCTGGTGTTCCT ACCAGAGCTGAGATCACTGATGCAGCCCATGGAAGGAGGGTAAAATGTGTCATGTTAAACAAAGGGAAACACATTGTGAAAGCAGTTTCAACTTTAGATA ACATCCTCCATTCGAAATCAGCAGAAAGGAAAGTAGACGTAAAGCCCGTTATACTCTCTAGCCACCATTTGCGTTAA
AA sequence Show only first row Show all	>Potri.012G002500.1 pacid=42784058 polypeptide=Potri.012G002500.1.p locus=Potri.012G002500 ID=Potri.012G002500.1.v4.1 annot-version=v4.1 MSGVSSLSASLVTNPTSRLPHHAIQCTEFLGFVPKGRPINVTLSWRFPVRTQVGVIQLFGLHKTKLKLKSFAFSVPNENDQAGLCDSGTCTGDEMPVPFE NDENLKGPDEEIVSSVLGTEVDSLRTVEHLGSKGSVVEKLKAVYLHVLASEQWNASQLKLCHRNYLDSATNLIHYLALRCLDIQQLKEDLTLLGLMNLET INLHVLSSLNASIRLLEALKSNSLNPNDSVSEGIFTEKRLDPQNDGKFTIQAMRKKASSNSEFLLGRLQDGRTTHIMVTVGQEATENETFITDLIKAGTS IIRINCAHGNPSIWSEIIKRVKESSQMLEKPCRILMDLAGPKLRTGKLKSGPSVVKISPKKNASGNVVFPAQVWLSHREAGTPPTHLSPDAVLFVDDQQF LSELEIGDTIRFSDARGKKRLLRISKKIHVFSGTGCVAECTRTAYVQSGTELHLKGKKRRSQLGKVVDVPAIEPYIRLRVGDLLVISRCSSSELDEMHVS MSGTHKITCSSGYLFDSVTPGEPIAFDDGKIWGVIKGTDISEIIVSITHASPKGSKLGSDKSINIPESNIRFEGLTSKDLMDLEFVAAHADIVGVSFVRD IHDIVVLRQELEKRKLQNLGVILKIETKSGFENLPLMLLEAMKSSNPLGVMIARGDLAVECGWEMLADMQEEIISLCGAAHIPVVWATQVLESLVKSGVP TRAEITDAAHGRRVKCVMLNKGKHIVKAVSTLDNILHSKSAERKVDVKPVILSSHHLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49160			pyruvate kinase family protein...		Potri.012G002500 [exp]	0	1
AT5G01950			Leucine-rich repeat protein ki...		Potri.016G140200 [exp]	2.44	0.9111
AT3G45310			Cysteine proteinases superfami...		Potri.006G141700 [exp]	5.38	0.9176	Pt-ELSA.1
AT1G68940			Armadillo/beta-catenin-like re...		Potri.003G201000 [exp]	9.16	0.8961
AT3G46540			ENTH/VHS family protein (.1)		Potri.001G239200 [exp]	9.16	0.9064
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.003G198401 [exp]	9.48	0.8947
					Potri.001G077900 [exp]	11.95	0.8840
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G057901 [exp]	17.08	0.8978
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.008G122200 [exp]	18.89	0.8779
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.016G021200 [exp]	19.49	0.8604
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.016G021700 [exp]	20.73	0.8575

Compare expression of checked genes

Potri.012G002500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.