Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53120 582 / 0 SPMS, SPDS3, ATSPDS3 spermidine synthase 3 (.1.2.3.4.5.6) AT1G23820 417 / 5e-146 SPDS1 spermidine synthase 1 (.1.2) AT1G70310 408 / 7e-143 SPDS2 spermidine synthase 2 (.1) AT5G19530 119 / 9e-31 ACL5 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G018900 [exp] 659 / 0 AT5G53120 545 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.010G094600 [exp] 418 / 6e-147 AT1G70310 538 / 0.0 spermidine synthase 2 (.1) Potri.008G147200 [exp] 417 / 2e-146 AT1G70310 532 / 0.0 spermidine synthase 2 (.1) Potri.010G089200 [exp] 114 / 2e-28 AT5G19530 447 / 2e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G151800 [exp] 106 / 6e-26 AT5G19530 445 / 7e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.006G222200 [exp] 105 / 1e-25 AT5G19530 533 / 0.0 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019016 [exp] 598 / 0 AT5G53120 571 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Lus10003398 [exp] 591 / 0 AT5G53120 563 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Lus10039416 [exp] 417 / 1e-146 AT1G23820 509 / 0.0 spermidine synthase 1 (.1.2) Lus10029169 [exp] 415 / 2e-145 AT1G23820 562 / 0.0 spermidine synthase 1 (.1.2) Lus10030629 [exp] 404 / 1e-141 AT1G70310 531 / 0.0 spermidine synthase 2 (.1) Lus10012996 [exp] 397 / 6e-138 AT1G23820 537 / 0.0 spermidine synthase 1 (.1.2) Lus10030861 [exp] 386 / 5e-134 AT1G23820 514 / 0.0 spermidine synthase 1 (.1.2) Lus10018259 [exp] 323 / 9e-110 AT1G23820 374 / 6e-130 spermidine synthase 1 (.1.2) Lus10040649 [exp] 147 / 5e-42 AT1G23820 139 / 2e-39 spermidine synthase 1 (.1.2) Lus10010538 [exp] 122 / 2e-31 AT5G19530 439 / 1e-155 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01564 [poplar] [flax] Spermine_synth Spermine/spermidine synthase domain
Representative CDS sequence Show only first row Show all	>Potri.012G002600.9 pacid=42783094 polypeptide=Potri.012G002600.9.p locus=Potri.012G002600 ID=Potri.012G002600.9.v4.1 annot-version=v4.1 ATGGAGGGCGGCACAGGAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGCGAATAATGGGAATGGTTCAGAGAAGGCTATTCCTTCTTGTTGCC TGAAGGCTAGGGCTTCTGCCCCTGAGCTTGACGCAAAATGCCATTCTACTGTTGTTTCTGGGTGGTTCTCGGAATCTCATCCTTGCGCTGGCAAAACTAG CAAAAAGGTTTACTTCAACAACCCCATGTGGCCTGGAGAAGCACATACACTGGAAGTGAAAGAGGTTTTATACAAGGGAAAGTCAGAGTATCAAGAGGTC TTGGTTTTTGAGTCAACATCATATGGGAAAGTGCTTGTTCTTGATGGTATTGTTCAATTGACTGAGAAAGATGAATGCGCATACCAGGAGATGATCGCCC ATCTTCCCCTTTGTTCGATTCCATCTCCCAAAACTGTTTTGGTTGTTGGTGGTGGTGATGGTGGTGTTCTTAGGGAAATTTCTCGCCATAGTTCTGTGGA ACATATTGATATTTGTGAAATAGATCAGATGGTTATAGATGTGTCTAAGAAGTTTTTTCCACAATTGGCTGTTGGATTTGAGGATCCTCGGGTCCGACTT CATGTGGGTGATGCTGTAGATTTTCTCCGGTCAACTCCTGAAGGGAAGTATGATGCTATTATTGTTGATTCCTCAGACCCTGTAGGTCCTGCTCAAGAGC TAGTAGAGAAGCCATTTTTCGAGACAATAGCTAGAGCATTAAGGCCTGGTGGTGTCCTCTGTAACATGGCAGAAAGTATGTGGCTTCATACACATCTTAT TGAGGATATGATCTCTATTTGCCGTGAAACATTTAAGGGTTCTGTTCATTATGCCTGGGCAAGTGTTCCAACATATCCAAGTGGCCTGATCGGGTTTGTC CTATGCTCAACAGAGGGCCCGCCTGTTGAGTTCTTGAATCCTGTCAATCCTATTGAGAAGTTAGAAGGTGCTACCAAGTATAAAAGAGAACTCAAGTACT ATAACTCTGAGGTTCACTCAGCTGCCTTTGCATTGCCAACATTTTTGAAGAAGGAGGTGAGCTTGCTCCAAGATCAAGGGAGGTGA
AA sequence Show only first row Show all	>Potri.012G002600.9 pacid=42783094 polypeptide=Potri.012G002600.9.p locus=Potri.012G002600 ID=Potri.012G002600.9.v4.1 annot-version=v4.1 MEGGTGRGLECQKTMDGKANNGNGSEKAIPSCCLKARASAPELDAKCHSTVVSGWFSESHPCAGKTSKKVYFNNPMWPGEAHTLEVKEVLYKGKSEYQEV LVFESTSYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHSSVEHIDICEIDQMVIDVSKKFFPQLAVGFEDPRVRL HVGDAVDFLRSTPEGKYDAIIVDSSDPVGPAQELVEKPFFETIARALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGLIGFV LCSTEGPPVEFLNPVNPIEKLEGATKYKRELKYYNSEVHSAAFALPTFLKKEVSLLQDQGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Potri.012G002600 [exp]	0	1
AT1G16670			Protein kinase superfamily pro...		Potri.011G112000 [exp]	16.18	0.7737
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Potri.014G006000 [exp]	17.43	0.7438
AT1G78600	CO	BBX22, DBB3, ST...	SALT TOLERANCE HOMOLOG 3, DOUB...		Potri.011G105400 [exp]	19.18	0.7564
AT3G14130			Aldolase-type TIM barrel famil...		Potri.003G069400 [exp]	30.00	0.6988
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.017G005700 [exp]	72.28	0.6989
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.001G310700 [exp]	77.45	0.6626
AT2G14860			Peroxisomal membrane 22 kDa (M...		Potri.001G296400 [exp]	88.38	0.6667
AT1G64140			unknown protein		Potri.003G134200 [exp]	110.79	0.6744
AT3G15140			Polynucleotidyl transferase, r...		Potri.001G030900 [exp]	205.21	0.6298

Compare expression of checked genes

Potri.012G002600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.