Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66920 346 / 2e-111 Protein kinase superfamily protein (.1.2) AT1G66910 342 / 5e-109 Protein kinase superfamily protein (.1) AT5G38280 336 / 6e-107 PR5K PR5-like receptor kinase (.1) AT1G66980 338 / 1e-103 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G38260 323 / 2e-102 Protein kinase superfamily protein (.1) AT4G18250 329 / 3e-102 receptor serine/threonine kinase, putative (.1) AT1G70250 327 / 5e-102 receptor serine/threonine kinase, putative (.1) AT1G67000 327 / 2e-101 Protein kinase superfamily protein (.1) AT1G66930 321 / 4e-101 Protein kinase superfamily protein (.1) AT5G39030 319 / 4e-99 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G003500 [exp] 1105 / 0 AT1G66920 358 / 4e-116 Protein kinase superfamily protein (.1.2) Potri.012G003000 [exp] 1093 / 0 AT1G66920 356 / 5e-115 Protein kinase superfamily protein (.1.2) Potri.015G018200 [exp] 922 / 0 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.015G018000 [exp] 906 / 0 AT1G66920 355 / 2e-114 Protein kinase superfamily protein (.1.2) Potri.012G003400 [exp] 763 / 0 AT1G66920 238 / 2e-71 Protein kinase superfamily protein (.1.2) Potri.017G035500 [exp] 676 / 0 AT1G66920 336 / 2e-107 Protein kinase superfamily protein (.1.2) Potri.007G125600 [exp] 646 / 0 AT5G38260 357 / 3e-115 Protein kinase superfamily protein (.1) Potri.007G126200 [exp] 598 / 0 AT1G66920 333 / 3e-107 Protein kinase superfamily protein (.1.2) Potri.007G125100 [exp] 552 / 0 AT1G66920 347 / 2e-113 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014923 [exp] 648 / 0 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10025553 [exp] 564 / 0 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10026761 [exp] 466 / 3e-159 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1) Lus10025547 [exp] 464 / 2e-157 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10014924 [exp] 372 / 5e-121 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10022359 [exp] 348 / 3e-112 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025545 [exp] 321 / 4e-105 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10008335 [exp] 333 / 6e-105 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025492 [exp] 331 / 9e-105 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10027085 [exp] 271 / 2e-86 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.012G002800.1 pacid=42783411 polypeptide=Potri.012G002800.1.p locus=Potri.012G002800 ID=Potri.012G002800.1.v4.1 annot-version=v4.1 ATGGATCTCTCTGTAGTTTGCTTGTTGATGCTGGTCCTTGTATGTCATGGAGCTGGCCATAACGAAACGTTCCAAGAAGCAAAGTGTAAGAAGCATGGTC CGGCCATAAGATTTCCATTCAGACTCGACAAGCAGCCAGAGTACTGTGGCTATGATCCTGGGTTTGTTCTATCTTGCAATGAAAGGAACGAAACATTGTT GCAGCTACCAACTTCTGTGACGCTCAACATCAAGAAAATTGACTATAAATCACGGTTAATCATTGCAGCTGATCCAGATAACTGCCTCCCAAGACATCTT AGAAATTTCAGTTTATCTAAATCTCCTTTCAAATTTGCGGACCAGTACCAGTATGATTGTACCCTTTTCAACTGTACATCAAAGCATGGAGATTATTATG ATCGGATACCTTGCCTTAGTGTTCCTGGATATGATATCTATGCCTATAGTTCTAATAATTTCCTCGGTTATACAGATCTGACTTCTTGTACCAAGATGTA TAATGTTACATCAATTCCATCGGAAATGACTGGCGGTGATAATATTCTTCACTTGAACTGGTCAGAACCAGCAGCATGTGGAATTTGTGAAGAACACGGC ATGTTCTGCAGATGGAAGAATAACACTAAGCTTGGAACTGAATGCTATAAGAAGCCTAAATCAAAGAAAGGCAAAATAAGGAAGATAGAGGGTGCGGTTG CAACCGTGGGTTCGGTTCTTGTATTACTGGTATTGTTGGCAGCCTACCGTGTCTACAGCTCTGATAAAGCAGCGAAAAACAATCAGAAAAGGATTGAAAA CTTTCTGGCAGATTATAAAGCTCTCAAGCCCGCAAGATACACGTATGCTGACATTAAAAGGATTACGGATGAGTTCAAGGACAAGCTGGGTCAGGGAGCA TATGGAACTGTGTTTAAAGGAAAGCTTTCTGATGAGATCTTTGTTGCTGTGAAGATCCTGAACAACTCAACAGGAAACGGAGAGGAGTTCATCAATGAAG TGGCAACAATGGGAAAGATCCATCACGTCAATGTTATACGCCTAGTTGGTTACTGTGCTGATGGATTTCGAAGAGCTCTGGTCTATGATTACCTGCCAAA TGAATCACTAGAGAAATTTGTATCTTCAGAACATGGCGAAACCTCCAGTCTTAGCTGGGAGAGGCTTCAGGATATTGCTCTTGGCATGGCTAAAGGCATC GAATATCTTCACCAAGGCTGTGATCAGCGAATCCTCCATTTCGACATCAAACCTCATAACATCTTGTTAGACGACCATTTCAATCCAAAGATTTCTGATT TCGGTCTAGCAAAGCTGTGCTCCAAGGATCAGAGTGCCGTGTCCATGACTACAGCTCGAGGAACCATGGGGTATATTGCACCTGAAGTTTTCTCTAGGAA CTTCGGGCATGTTTCCTATAAGTCTGATGTTTATAGTTTTGGAATGGTGTTGCTTGAAATGGTCGGAGGGAGGAAGACTATCGATGATAAGGTAGAGAAC AGCAATCAAATCTACTTCCCAGAATGGGTCTACAACAGCCTGGATAAAGGAGAAGAGCTGAGAATCAGAATTGAAAAGGAGGGGGACGCGCAAATCGCAA AGAAGCTGACTCTTGTGGGACTATGGTGCATTCAGTGGCACCCCGTGGATCGTCCGTCCATGAATACTGTCGTGCAAATGTTGGAAGGAGGAGACAAGTT AACAATGCCTCCTAGCCCTTTTGCTTCTGCAGGTCCTGGAAGAATGCATGCAAATATGCCAGGGAGACCTCATTATCAAGCGTTGGAAGTGATCTCTGAA ACAGAGTAA
AA sequence Show only first row Show all	>Potri.012G002800.1 pacid=42783411 polypeptide=Potri.012G002800.1.p locus=Potri.012G002800 ID=Potri.012G002800.1.v4.1 annot-version=v4.1 MDLSVVCLLMLVLVCHGAGHNETFQEAKCKKHGPAIRFPFRLDKQPEYCGYDPGFVLSCNERNETLLQLPTSVTLNIKKIDYKSRLIIAADPDNCLPRHL RNFSLSKSPFKFADQYQYDCTLFNCTSKHGDYYDRIPCLSVPGYDIYAYSSNNFLGYTDLTSCTKMYNVTSIPSEMTGGDNILHLNWSEPAACGICEEHG MFCRWKNNTKLGTECYKKPKSKKGKIRKIEGAVATVGSVLVLLVLLAAYRVYSSDKAAKNNQKRIENFLADYKALKPARYTYADIKRITDEFKDKLGQGA YGTVFKGKLSDEIFVAVKILNNSTGNGEEFINEVATMGKIHHVNVIRLVGYCADGFRRALVYDYLPNESLEKFVSSEHGETSSLSWERLQDIALGMAKGI EYLHQGCDQRILHFDIKPHNILLDDHFNPKISDFGLAKLCSKDQSAVSMTTARGTMGYIAPEVFSRNFGHVSYKSDVYSFGMVLLEMVGGRKTIDDKVEN SNQIYFPEWVYNSLDKGEELRIRIEKEGDAQIAKKLTLVGLWCIQWHPVDRPSMNTVVQMLEGGDKLTMPPSPFASAGPGRMHANMPGRPHYQALEVISE TE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66920			Protein kinase superfamily pro...		Potri.012G002800 [exp]	0	1
AT1G66920			Protein kinase superfamily pro...		Potri.012G003000 [exp]	3.46	0.9901
AT2G42350			RING/U-box superfamily protein...		Potri.011G063100 [exp]	3.87	0.9869
AT1G66920			Protein kinase superfamily pro...		Potri.012G003200 [exp]	6.48	0.9855
AT1G66920			Protein kinase superfamily pro...		Potri.012G003500 [exp]	7.00	0.9851
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.010G140000 [exp]	10.00	0.9810
AT1G68840	AP2_ERF	EDF2, RAV2, RAP...	TEMPRANILLO 2, RELATED TO AP2 ...		Potri.003G011132 [exp]	14.00	0.9766
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G003601 [exp]	15.00	0.9855
AT5G08350			GRAM domain-containing protein...		Potri.004G068000 [exp]	15.49	0.9825
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.007G140500 [exp]	15.96	0.9692
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.016G101600 [exp]	18.16	0.9834

Compare expression of checked genes

Potri.012G002800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.