Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66920 69 / 4e-13 Protein kinase superfamily protein (.1.2) AT1G18390 62 / 1e-10 Protein kinase superfamily protein (.1.2) AT1G67000 55 / 4e-08 Protein kinase superfamily protein (.1) AT1G66880 52 / 3e-07 Protein kinase superfamily protein (.1) AT5G38210 51 / 4e-07 Protein kinase family protein (.1) AT1G66930 50 / 1e-06 Protein kinase superfamily protein (.1) AT1G67025 47 / 4e-06 unknown protein AT1G66910 44 / 0.0001 Protein kinase superfamily protein (.1) AT5G38260 44 / 0.0001 Protein kinase superfamily protein (.1) AT5G50290 42 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G002900 [exp] 276 / 5e-94 AT3G46400 47 / 6e-06 Leucine-rich repeat protein kinase family protein (.1) Potri.015G018600 [exp] 225 / 4e-69 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.007G125800 [exp] 179 / 1e-51 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.007G125450 [exp] 179 / 2e-51 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G125000 [exp] 170 / 2e-48 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.017G007900 [exp] 167 / 4e-47 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.007G126100 [exp] 166 / 6e-47 AT1G70250 290 / 3e-87 receptor serine/threonine kinase, putative (.1) Potri.008G125500 [exp] 129 / 2e-33 AT1G67000 309 / 3e-94 Protein kinase superfamily protein (.1) Potri.017G009500 [exp] 126 / 2e-32 AT5G38280 327 / 3e-102 PR5-like receptor kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014924 [exp] 210 / 4e-63 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10008362 [exp] 179 / 2e-52 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10025554 [exp] 178 / 2e-52 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10025492 [exp] 165 / 2e-46 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10022359 [exp] 113 / 4e-28 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10027117 [exp] 108 / 6e-28 AT1G18390 47 / 8e-06 Protein kinase superfamily protein (.1.2) Lus10027119 [exp] 108 / 2e-26 AT5G38260 210 / 3e-60 Protein kinase superfamily protein (.1) Lus10008830 [exp] 102 / 8e-25 AT4G02750 97 / 1e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007934 [exp] 101 / 8e-24 AT5G38260 273 / 3e-83 Protein kinase superfamily protein (.1) Lus10027013 [exp] 91 / 2e-21 AT5G38280 195 / 3e-58 PR5-like receptor kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.012G003301.1 pacid=42782555 polypeptide=Potri.012G003301.1.p locus=Potri.012G003301 ID=Potri.012G003301.1.v4.1 annot-version=v4.1 ATGTTTAGTAGAGTTCTTCTATGTGCTGTCTTTTTTGTGGTCCTCCTCATAAACCATGAGCCCTGTGCTGCTAAAACAAATCATCTTTGTGAACATCCTT CTTCGTGTGGCCACCTTACTAACATTAGCTACCCTTTTCGACTACAAGGCGACCCGGAAAACTGCGGTGATCCAAGCTATCAGTTGACTTGCGAGAACAA TCGTGCAATTCTAAGCCTGTATTCAGGAAAGTACTATGTGAAGGAGATCAATTACAAATATTCAACGATTCGGATAGCTGATGTTGGTTTACAAGAAGAT AATTGCTCTACGCTTCCTCTGTATCATTTGTCAGAGAACAACTTCACAAAAACATATTTCTATGTTGCCAGAATCCTATGCAGTCCCCTCTATATATCAG CACTAATTCTTTCCTCGAAGAAGGCATACCGGTATGTTGTTTCTGGCGATATGAAGGCTTCGGAAGTAGGGGACTCGTGCCCCGTTGATCTAGTGGTTAT GGCAACTCCGCTAGATAACAAAAGGAGCCTGTCATACATTGATATCCATAAAATTCTTGTGAATGGTTTGACGCTAGAATGGGATACTATATACTGTAGA GAATGCAAGGCGCAAGGCTTTTGCTTATTGGATAATACCACTCGATTATGTCTTGCGATAAGACTTGTATGCGGGGCTCCATGTGTCTTCATCTTTCTGA TCTATAAATGGAGGAGGAGGCATTTATCAACGTATGACAATATCGAAGATTTTCTGCAAAGTCACCATAACTTCATGCCCATAAGGTACTCATACCCGGA AATTAAAAAGATGACAAGCTATTTCAAGGAAAAATTGGGTGAGGGTGGCTATTGTTGA
AA sequence Show only first row Show all	>Potri.012G003301.1 pacid=42782555 polypeptide=Potri.012G003301.1.p locus=Potri.012G003301 ID=Potri.012G003301.1.v4.1 annot-version=v4.1 MFSRVLLCAVFFVVLLINHEPCAAKTNHLCEHPSSCGHLTNISYPFRLQGDPENCGDPSYQLTCENNRAILSLYSGKYYVKEINYKYSTIRIADVGLQED NCSTLPLYHLSENNFTKTYFYVARILCSPLYISALILSSKKAYRYVVSGDMKASEVGDSCPVDLVVMATPLDNKRSLSYIDIHKILVNGLTLEWDTIYCR ECKAQGFCLLDNTTRLCLAIRLVCGAPCVFIFLIYKWRRRHLSTYDNIEDFLQSHHNFMPIRYSYPEIKKMTSYFKEKLGEGGYC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66920			Protein kinase superfamily pro...		Potri.012G003301 [exp]	0	1
AT5G49630		AAP6	amino acid permease 6 (.1)		Potri.006G236100 [exp]	7.74	0.9042
AT3G19920			unknown protein		Potri.007G073600 [exp]	8.66	0.9042
					Potri.019G016104 [exp]	11.48	0.7916
					Potri.008G053150 [exp]	11.61	0.9042
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Potri.016G122500 [exp]	16.12	0.8505	GRAS66
AT3G51020			unknown protein		Potri.002G011500 [exp]	17.00	0.8087
AT2G14760	bHLH	bHLH084	basic helix-loop-helix (bHLH) ...		Potri.014G017100 [exp]	18.70	0.7812
					Potri.006G017750 [exp]	22.44	0.8618
					Potri.003G109601 [exp]	31.98	0.7602
AT5G44265			Bifunctional inhibitor/lipid-t...		Potri.017G013200 [exp]	37.22	0.6697

Compare expression of checked genes

Potri.012G003301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.