Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CDC2.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10270 660 / 0 CDKC;1 cyclin-dependent kinase C;1 (.1) AT5G64960 655 / 0 CDKC2, CDKC;2 Cyclin-dependent kinase C;2, cyclin dependent kinase group C2 (.1.2) AT1G53050 351 / 3e-113 Protein kinase superfamily protein (.1) AT1G71530 344 / 3e-113 Protein kinase superfamily protein (.1.2) AT5G50860 345 / 2e-112 Protein kinase superfamily protein (.1) AT5G44290 341 / 5e-110 Protein kinase superfamily protein (.1.2.3.4) AT1G03740 341 / 2e-109 Protein kinase superfamily protein (.1.2) AT1G33770 332 / 9e-107 Protein kinase superfamily protein (.1) AT5G39420 332 / 2e-106 CDC2CAT CDC2C (.1) AT1G74330 331 / 1e-105 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G024600 [exp] 725 / 0 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.015G103300 [exp] 356 / 1e-116 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.013G032200 [exp] 355 / 4e-116 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G204400 [exp] 353 / 1e-115 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.012G103900 [exp] 352 / 8e-115 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.005G045500 [exp] 350 / 3e-114 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.011G119400 [exp] 353 / 8e-114 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 350 / 7e-113 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 350 / 1e-112 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022043 [exp] 697 / 0 AT5G10270 710 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10042588 [exp] 692 / 0 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10036106 [exp] 666 / 0 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10026790 [exp] 655 / 0 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10001715 [exp] 351 / 2e-114 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012805 [exp] 350 / 4e-114 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 351 / 4e-113 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035892 [exp] 347 / 6e-113 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10025773 [exp] 348 / 4e-112 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10001285 [exp] 345 / 3e-111 AT1G71530 648 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.012G003700.3 pacid=42782750 polypeptide=Potri.012G003700.3.p locus=Potri.012G003700 ID=Potri.012G003700.3.v4.1 annot-version=v4.1 ATGGCCGCAGCAGGAGCATTAGCAGCGCCGGGCCAACTTAACCTGACAGAATCACCTTATTGGGGTTCGAGAAGCGTTGATTGTTTTGAGAAATTAGAAC AGATTGGTGAAGGCACTTATGGCCAGGTTTACATGGCTAGAGAAATAAAGACAGGTGAAATAGTTGCTTTGAAGAAAATAAGAATGGACAATGAGAGAGA AGGGTTTCCTATAACAGCCATACGGGAAATCAAAATTCTGAAGAAGCTACACCATGAAAATGTTATTAAGCTGAAAGAGATAGTGACATCTCAAGGCCCT GAGAAAGATGATCAAGGAAAGCCAGGCAAGTGCTCTACTTTGCATGTGCATTGCCTATCAATTGATGATAACAAGTATAAAGGTGGGATATACATGGTTT TCGAATACATGGACCATGATTTGACAGGTCTTGCTGATCGTCCTGGGATTAGATTTACAGTTCCACAGATTAAGTGCTACATGAGGCAGCTTCTAACAGG GCTGCACTATTGTCACATAAATCAAGTGCTTCATAGAGATATTAAAGGATCTAATCTTCTTATTGACAATGAGGGTAATCTGAAGCTTGCTGATTTTGGG CTTGCCCGATCATTCTCAAATGAGCACCAATCAAATCTTACGAATCGTGTTATTACTCTATGGTACAGGCCCCCAGAGTTGCTGCTTGGGTCGACGAAGT ATGGTCCAGCTGTTGATATGTGGTCTGTTGGTTGTATCTTTGCTGAACTTCTGCATGGAAAGCCAATTTTCCCTGGGAAAGATGAGCCTGAACAACTAAA TAAGATTTTTGAGCTGTGTGGAGCTCCGGATGAGGTTAACTGGCCTGGAGTTTCAAAGATTCCTTGGTACAACAATTTTAAGCCAACAAGGCCTATGAAG AGACGTCTCAGAGAGGTTTTTAGACATTTTGACCGCCATGCCTTGGAGTTGCTGGAGAGGATGCTGGCTCTTGATCCTGCTCAGAGAATTTCAGCCAAGG ATGCGCTTGATGCTGAGTATTTCTGGACTGACCCACCACCATGTGACCCCAAGAGTTTACCAAAATATGAATCATCGCATGAGTTTCAGACAAAGAAAAA GCGCCAGCAACAAAGACAGCATGAAGAAAATGCCAAAAGGCAAAAACTACAGCATCCACAGCCGCATTCCCGCCTTCTACCCGTTCAGCAGTCTGGGGCA CGTCCCCAAATGCGGACAGGGCCTAATCAGTCCATGCATGGTTCTCAGCCCCCAGTTACAGGTCCCGGACATTATGGGAGGCCTCGTGGACCTCCAGTTG GTCCAGGTAGATACCCTTCAGGTGGAACAAGTGGGGGATACAACCACCCGAGTCATGGTGGCCAAGGGGGAGGAGGTTATGGCAGCGGTCCATATCCTCC ACAAGGACGAGCCCCACCATATCCTTCCACTGGCATGCCTGGTGGTGCTCCACGTGGAGGAGGAGGTAGTGGATATGGAGTTGGTGCTCCAAATTATCCT CAAGGTGGTCCATACGGTGGCTCTGGTGCTGGGCGTGGCTCAAACATGATGGGAGGAAACCGCAACCAACAATATGGTTGGCAGCAGTAA
AA sequence Show only first row Show all	>Potri.012G003700.3 pacid=42782750 polypeptide=Potri.012G003700.3.p locus=Potri.012G003700 ID=Potri.012G003700.3.v4.1 annot-version=v4.1 MAAAGALAAPGQLNLTESPYWGSRSVDCFEKLEQIGEGTYGQVYMAREIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSQGP EKDDQGKPGKCSTLHVHCLSIDDNKYKGGIYMVFEYMDHDLTGLADRPGIRFTVPQIKCYMRQLLTGLHYCHINQVLHRDIKGSNLLIDNEGNLKLADFG LARSFSNEHQSNLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMK RRLREVFRHFDRHALELLERMLALDPAQRISAKDALDAEYFWTDPPPCDPKSLPKYESSHEFQTKKKRQQQRQHEENAKRQKLQHPQPHSRLLPVQQSGA RPQMRTGPNQSMHGSQPPVTGPGHYGRPRGPPVGPGRYPSGGTSGGYNHPSHGGQGGGGYGSGPYPPQGRAPPYPSTGMPGGAPRGGGGSGYGVGAPNYP QGGPYGGSGAGRGSNMMGGNRNQQYGWQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Potri.012G003700 [exp]	0	1	CDC2.6
AT5G49220			Protein of unknown function (D...		Potri.008G213300 [exp]	2.23	0.8629
AT1G71080			RNA polymerase II transcriptio...		Potri.004G092200 [exp]	3.74	0.8180
AT5G48030		GFA2	gametophytic factor 2 (.1)		Potri.009G065500 [exp]	4.58	0.8331	GFA2.1
AT3G48070			RING/U-box superfamily protein...		Potri.012G074500 [exp]	5.65	0.8339
AT5G18810		SCL28, At-SCL28	SC35-like splicing factor 28 (...		Potri.008G196700 [exp]	6.32	0.8095
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Potri.015G106600 [exp]	6.70	0.7895
AT3G12350			F-box family protein (.1.2)		Potri.002G117900 [exp]	9.79	0.8141
AT4G12240	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.003G114700 [exp]	12.96	0.8241
AT1G18600		ATRBL12	ARABIDOPSIS RHOMBOID-LIKE PROT...		Potri.006G227300 [exp]	18.65	0.7495
AT5G22080			Chaperone DnaJ-domain superfam...		Potri.001G215800 [exp]	19.41	0.7951

Compare expression of checked genes

Potri.012G003700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.