Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27870 127 / 1e-29 Vacuolar iron transporter (VIT) family protein (.1) AT4G27860 99 / 3e-21 vacuolar iron transporter (VIT) family protein (.1), vacuolar iron transporter (VIT) family protein (.2) AT5G24290 90 / 3e-18 Vacuolar iron transporter (VIT) family protein (.1), Vacuolar iron transporter (VIT) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G127900 [exp] 178 / 4e-47 AT4G27870 182 / 2e-49 Vacuolar iron transporter (VIT) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022771 [exp] 143 / 7e-36 AT4G27870 155 / 4e-41 Vacuolar iron transporter (VIT) family protein (.1) Lus10035731 [exp] 140 / 1e-34 AT4G27870 136 / 2e-33 Vacuolar iron transporter (VIT) family protein (.1) Lus10011838 [exp] 138 / 2e-33 AT4G27870 161 / 9e-42 Vacuolar iron transporter (VIT) family protein (.1) Lus10037315 [exp] 131 / 1e-31 AT4G27870 135 / 2e-33 Vacuolar iron transporter (VIT) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G004000.7 pacid=42784169 polypeptide=Potri.012G004000.7.p locus=Potri.012G004000 ID=Potri.012G004000.7.v4.1 annot-version=v4.1 ATGGCATCCCCTACTCCCTCCCTCCTTAGCCAAATACCAATGGAAAATCAGAAACAAGAATTGTTGCCCGATGAGGAGGAGGAAGTGCTGTCTCTTCGAA GGCATTGCAGCAGCAGCGACGACGACGGCGGCAACAACAACAACAACACAACTTCTGCAAACACTGCTCTGCTCGTTGATATTTTTTCTACCAATGGTAA TGAAAATGCAAATGAAACTAGAATTGGTAGCCTTATCAGCAGCAGCAGCAATAACAATCTTAACGAGGACTCAGAGACTCCGAAAGTAGGAGTATCATCA CCCTGTACTGTATCTCCGCATAAACACAGTGGGGATGATGATAAGGACAAGGATGAGAGTGAAGAGAGAGCCCATCACCTAAACAGCGTTTACTTTGACC AACACCATGGAATATGGAAATGTCACCACTGCAATTGGACCTACTGCGTTGGAACTCCCTGTTTTGATCATAAAGAGTGCTCGCACACGCACACGCACAC TCACACGCACAGCCTCATAAATCTCAAAAATTTTAATCAACAGCAACCATGTTTGGTTTTTGGAACTAAAGGTGCTGATTCCATTAATGGAGCTTCTGGC GTGAACTGTGGTGGTGTTACATGTTCTGTTTCGGACACAAGTCCCAGATATGCGGAAGTCCTTGTAAAGAATTCTGAGATTCAGAAAAGTCTAGTCAAGG ATGACAACCTTCAATTAGGGGAAAATATGGATAATGAAGGGTTTTCTGGTTCAGGTCTTACACCTTTAGAAGACACATTCGAAGAACACAATTTTAAATC AAAACCTTCTGACAGTGAAACTAGAGTAGTTGGAGATTTGGACTTGATAGAAGAAATAGACCAGGAAATGACAGAATTCGATGTTGAGAAGGTGTTAGAG AAGCAGAATACACATGATTTGTATTGCCCTAACTGTAATTCCTGTATTACAAGAAGGGTTATCCTTCGTAGAAGAAGATGGAAGAATCGAAATGCACGTC GTAAACCAAAACACGCCAAAGTTGACACAATTGTTCCCTCTGAATCGAATGGCAATTCTACCTATTCAGATGCCAATTCTGCTGATTCAGCCAGTGGTCC GGGTCATGATATAGCTAACATTTGTTCAAACGATAGCCCAACATCTGCAGTCAATGATCATAATTGCGATAGAGAACCAGATGTATTCAGATGCTTATCA TGCTTCAGCTTCTTTATTCCTGCAGGGAATGGTTTTAAATTGTTTCGGGTATCATCCACTGAGAATGAAAATGTTCAAGATCCTCAGAAGATATCAACAG CCAACACAAATTGGTTCTTCTCTATTTTTGCAACTCATAAGAGGAAAACAACCACTGAGCAAGGTAATGCTGCAGTGGACCATACTCAAGTACGTGGAAT GAATCAGGACGCCTCATCAGGCTCCCCCAACAATTTTACATCCTCAAATGGAAATGATCATTCTGTAATGCCACATGCTGAAAGAACTATAGTCAAAACG GGAGAACATCCAGAAAGTTCTTATTCTAAGCCTCACCAAAGTGGAGCAGAATCTCTGAATCCTTCAACAATGGAGCCTTTATTGCTTGATAAATCACCAC AAGGAATAAACCTGAAGTCCAATTTGACATCTAGGAATGGGATACTTGCAGATCAAAATGCTCCTCTCCTTTCTGTTGATTTACCATCGGTTGAATCCTC TTCAATTGCAGGAATATTAAATAATATGGGAGGTGCATCTCTTAAACCTGGAATGGGGATTGTAAGTTCCTCAAGGGAAACAAAATTCAATGAAACTGCA TTGATCAGTGCTAGAGAGAAATCAGGTGATGCAGCTGGAAACTCAGGTGGGTCTTTAATGAACCATGCTATCATGGATACTGCTCAACTGTTACCATACT CTTCAGGTAGCATGGAAGGTCTAAAGGAAAATGCACCGTTTAGACCTCAAGGTGGAGTGAATCTTCCAGAGTATTCAACTTCCAAATCTTTAATCCCTGA GCAGTCAGAGATACAAATAAAAGAGAAATTCAACATGGCAAAAGGGAATGAAAAACCTTTACAAAATGGCCAGGCCTCGTCAACACAAGGAACTTCATTG TCCTCTCAATTATATTCTGAAGGAGGATTTATAAATGATGCTGCTTTGAAACACCATGAAGTAGGAAAAGGTTCTCTAAATTCTTTGAGCCAAGGAACCT CAAGGCCTGAAAAAGAGAAAGTCAATATAGGAGAAAATGAAGTTAATGCTATGGAAAACAAAAATATAGGGAATGATGTCATAGTCACCATTGAAAAAGA GCCACCAAAACGTGGAGATTCTGAGATTGTCTGTATTGATTCAGTGGAACCTACAAGCTTGCTGAACAGTACGAACCAGACAAATGCGAGTGAACGAAAA GGTGCTGGAGTAGGTGAATCCTGGCAATGGGAGATTTTAAAAAGCATTGTATATGGTGGTTTAATAGAATCAATTACAAGTCTAGGTGTAGTGTCTTCTG CTGCTGGTGCTGGTGCTGGAACTTTGAACATTTTAGCACTTGGCTTGGCAAATTTGATAGGAGGGCTTTTCATAATTGGTCATAATCTTGTGGATCTGAA AAATGATCGTTCCAATCAAGTGAATGAGCAGGAGGATCGATACCAAGAAACACTAGGACGAAGGGACAACTTTTCGTTACATGCAACACTATCTATTTTA TCATTCCTTATTTTTGGGCTACTGCCTCCTGTCATGTATGGATTCTCGTTTCGGAAGAGTGATGATAGAGATCTCAAGCTTGCAGCAGTTGATGGGGCCT CCCTTTTTTACATCATATTGCTTGCTATAGGTAAGGCCCACATTCAGAGGAAGCAGCCCAAGCCATACATCAGCACTGTATTATACTTCTTCTGCATTGG GCTTATGGCCTCGGGCGCTTCTTATGTAGTTGGGGACCTCATCAGTAAGCTATTGCAGAAAATAAGTGGGTTTGAGTCTAACTTGCCCTTTCCGGAGTTG AAAACATGGGCATCTTATTGA
AA sequence Show only first row Show all	>Potri.012G004000.7 pacid=42784169 polypeptide=Potri.012G004000.7.p locus=Potri.012G004000 ID=Potri.012G004000.7.v4.1 annot-version=v4.1 MASPTPSLLSQIPMENQKQELLPDEEEEVLSLRRHCSSSDDDGGNNNNNTTSANTALLVDIFSTNGNENANETRIGSLISSSSNNNLNEDSETPKVGVSS PCTVSPHKHSGDDDKDKDESEERAHHLNSVYFDQHHGIWKCHHCNWTYCVGTPCFDHKECSHTHTHTHTHSLINLKNFNQQQPCLVFGTKGADSINGASG VNCGGVTCSVSDTSPRYAEVLVKNSEIQKSLVKDDNLQLGENMDNEGFSGSGLTPLEDTFEEHNFKSKPSDSETRVVGDLDLIEEIDQEMTEFDVEKVLE KQNTHDLYCPNCNSCITRRVILRRRRWKNRNARRKPKHAKVDTIVPSESNGNSTYSDANSADSASGPGHDIANICSNDSPTSAVNDHNCDREPDVFRCLS CFSFFIPAGNGFKLFRVSSTENENVQDPQKISTANTNWFFSIFATHKRKTTTEQGNAAVDHTQVRGMNQDASSGSPNNFTSSNGNDHSVMPHAERTIVKT GEHPESSYSKPHQSGAESLNPSTMEPLLLDKSPQGINLKSNLTSRNGILADQNAPLLSVDLPSVESSSIAGILNNMGGASLKPGMGIVSSSRETKFNETA LISAREKSGDAAGNSGGSLMNHAIMDTAQLLPYSSGSMEGLKENAPFRPQGGVNLPEYSTSKSLIPEQSEIQIKEKFNMAKGNEKPLQNGQASSTQGTSL SSQLYSEGGFINDAALKHHEVGKGSLNSLSQGTSRPEKEKVNIGENEVNAMENKNIGNDVIVTIEKEPPKRGDSEIVCIDSVEPTSLLNSTNQTNASERK GAGVGESWQWEILKSIVYGGLIESITSLGVVSSAAGAGAGTLNILALGLANLIGGLFIIGHNLVDLKNDRSNQVNEQEDRYQETLGRRDNFSLHATLSIL SFLIFGLLPPVMYGFSFRKSDDRDLKLAAVDGASLFYIILLAIGKAHIQRKQPKPYISTVLYFFCIGLMASGASYVVGDLISKLLQKISGFESNLPFPEL KTWASY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27870			Vacuolar iron transporter (VIT...		Potri.012G004000 [exp]	0	1
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.013G022000 [exp]	4.12	0.8370	Pt-LOX1.6
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Potri.002G106400 [exp]	7.07	0.7923
AT4G36850			PQ-loop repeat family protein ...		Potri.007G031800 [exp]	8.12	0.7600
AT3G03620			MATE efflux family protein (.1...		Potri.013G069400 [exp]	11.48	0.7995
					Potri.018G018700 [exp]	13.78	0.7545
AT4G31980			unknown protein		Potri.003G208300 [exp]	15.23	0.8034
AT2G38185			RING/U-box superfamily protein...		Potri.006G100400 [exp]	17.32	0.7901
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Potri.009G031300 [exp]	18.97	0.8010	APK1.1
AT1G25472		CPuORF54	conserved peptide upstream ope...		Potri.010G125700 [exp]	20.17	0.7904
AT1G48910		YUC10	YUCCA 10, Flavin-containing mo...		Potri.002G207400 [exp]	21.16	0.7821

Compare expression of checked genes

Potri.012G004000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.