Plant FIBer expression Database

Potri.012G004300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G24680 393 / 6e-135 Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032907
[exp]
461 / 1e-160 AT5G24680 325 / 5e-108 Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0125 Peptidase_CA PF07910 Peptidase_C78 Peptidase family C78
Representative CDS sequence
>Potri.012G004300.2 pacid=42782926 polypeptide=Potri.012G004300.2.p locus=Potri.012G004300 ID=Potri.012G004300.2.v4.1 annot-version=v4.1
ATGGATTCTTCTGTAAATTGTCCCTTTTGTCATCTAACCCTTCCTCCGTCACAACTTCAAAGGCATGCCAACAGCCACTTTGACGAGGATGATGGTGTCG
CTGAAAAGGATGAGCAACTTGCAAGGGACCTGGAATTGGCCCAGCAACTTTCTATTCCGCCCCCTTCTTCTACATTCACACTCCAAGAGAACAACACCAT
GGATGAAAAGATTTCTTGTTTGATTGCTTTGCAGTATAGGAGCTCCTTTTACCATGTCAAATCCCCTGGTGGTTTGATCTCCTTGTTGTCCAACTGTTTC
GAATTAGATGCTGATACCGACACCACTGTCTTATTGTCTGGATATGTTGACCATTTTCAGAGCTTGGCTTCTGAAGATGCTGGCTGGGGTTGTGGTTGGC
GTAATATCCAAATGCTTAGCTCCCATTTGCTTTCCCATAGACATGATGCCAGTGAGCTTTTGTTCGGTGGCTCTGGTTTTGTCCCTGACATTCCGTTTCT
TCAGAGATGGCTTGAGATTGCCTGGGAAAAAGGTTTTGATGCCCTTGGCTCTCATCATTTCAACAATTCTGTCTATGGTTCTAAACATTGGATCGGAACT
ACTGAATGTGCTGCCATTTTTCGCTCTTTTGGCCTTCGTGCTAGGATTGTAGATTTTGGCCCTAAGGAATTGCAAAGCTTTTTTCTTTCCGTTCCTGGTA
CCAGTCTTACCCCACCTGTTGTGATAGCCAATGCCAGTGACAAGAGAAAAGCCTTTCAGGTTTATGGACCCATGGATAGATATTTGGTGGGACGAAATAG
TGATGTTTCACAGCTAGACTCCATTGTGAATGGCCAGTCTCAGTCCTCTACCAATTACGTGGCTGGTGGAAGTGATCATTCTATGGCAAATAGATTTCCG
AGGAAGAAAGAGGGTCATCAGGTTCTCCTCGACTGGGTTTGGAATTATTTTTCAGAGGAAAGCTTAACCACATCTGTCCAAAATCGACAAGTTGTCATCA
CCAACAGAGTACCCTTGTACTTCCAACATGATGGTCACTCAAGAACTATTGTTGGGATTCAATTCAGACGTCAACAGAATGGAGTGCCGCAGTACAACCT
CTTAATTTTGGACCCTGCTCATAGAACTGTAGCTCTAGAAAGATCACTTAGAGAAAATGCTGGATGGAAGAAGCTAATAAAAAGAGGAGCTCACACATTG
AAGAAGCCCCAATACCAGTTGTGCTACATTGATCCTGGGATAGCAATTGGAGAGGAGATGGAGCAGCTCAAGAAAATAGATAGTGTCTTCATTGAATTTT
AG
AA sequence
>Potri.012G004300.2 pacid=42782926 polypeptide=Potri.012G004300.2.p locus=Potri.012G004300 ID=Potri.012G004300.2.v4.1 annot-version=v4.1
MDSSVNCPFCHLTLPPSQLQRHANSHFDEDDGVAEKDEQLARDLELAQQLSIPPPSSTFTLQENNTMDEKISCLIALQYRSSFYHVKSPGGLISLLSNCF
ELDADTDTTVLLSGYVDHFQSLASEDAGWGCGWRNIQMLSSHLLSHRHDASELLFGGSGFVPDIPFLQRWLEIAWEKGFDALGSHHFNNSVYGSKHWIGT
TECAAIFRSFGLRARIVDFGPKELQSFFLSVPGTSLTPPVVIANASDKRKAFQVYGPMDRYLVGRNSDVSQLDSIVNGQSQSSTNYVAGGSDHSMANRFP
RKKEGHQVLLDWVWNYFSEESLTTSVQNRQVVITNRVPLYFQHDGHSRTIVGIQFRRQQNGVPQYNLLILDPAHRTVALERSLRENAGWKKLIKRGAHTL
KKPQYQLCYIDPGIAIGEEMEQLKKIDSVFIEF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G24680 Peptidase C78, ubiquitin fold ... Potri.012G004300
[exp]
0 1
AT5G37530 NAD(P)-binding Rossmann-fold s... Potri.004G083200
[exp]
15.06 0.7074
AT5G47940 unknown protein Potri.009G060000
[exp]
20.92 0.7050
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.005G050400
[exp]
27.92 0.6858
AT5G49020 ATPRMT4A ARABIDOPSIS THALIANA PROTEIN A... Potri.008G222700
[exp]
33.80 0.6858
AT5G63690 Nucleic acid-binding, OB-fold-... Potri.014G083500
[exp]
37.50 0.6694
AT3G20480 AtLpxK lipid X K, tetraacyldisacchari... Potri.001G418800
[exp]
38.88 0.6947
AT1G15215 SHH1, DTF1 SAWADEE homeodomain homolog 1,... Potri.001G189200
[exp]
52.97 0.6216
AT2G33860 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRI... Potri.011G059300
[exp]
53.35 0.6758
AT1G08450 AtCRT3, PSL1, E... PRIORITY IN SWEET LIFE 1, EMS-... Potri.007G131500
[exp]
54.49 0.6310
AT5G60340 P-loop containing nucleoside t... Potri.012G109400
[exp]
63.37 0.6733

Potri.012G004300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.