Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49590 402 / 5e-133 ATG13 autophagy-related 13, Autophagy-related protein 13 (.1.2.3) AT3G18770 189 / 7e-52 Autophagy-related protein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G010700 [exp] 203 / 5e-57 AT3G18770 380 / 3e-124 Autophagy-related protein 13 (.1) Potri.001G309800 [exp] 179 / 3e-48 AT3G18770 434 / 2e-144 Autophagy-related protein 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019097 [exp] 604 / 0 AT3G49590 466 / 4e-158 autophagy-related 13, Autophagy-related protein 13 (.1.2.3) Lus10034457 [exp] 585 / 0 AT3G49590 460 / 1e-155 autophagy-related 13, Autophagy-related protein 13 (.1.2.3) Lus10006790 [exp] 205 / 3e-58 AT3G18770 380 / 3e-125 Autophagy-related protein 13 (.1) Lus10005812 [exp] 193 / 3e-54 AT3G18770 385 / 2e-127 Autophagy-related protein 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0651 [poplar] [flax] Mad2 PF10033 [poplar] [flax] ATG13 Autophagy-related protein 13
Representative CDS sequence Show only first row Show all	>Potri.012G004400.1 pacid=42782766 polypeptide=Potri.012G004400.1.p locus=Potri.012G004400 ID=Potri.012G004400.1.v4.1 annot-version=v4.1 ATGGATATGCATGGTAATTCTCACCCTGATTCTGGAAAACTAGAACAAATTATTTCCCAGTTTCTATTGAAGAGCTTGCACATCATCTTGGACTCAAGAA TCCCTTCTCTTCATCCCCATGATCGCAGCAGGGAACTTTCTTCCACTTCTCGTGTCAAAAAGAGCGACAAATGGTTCAATTTAGTTCTCGGAGACCGCCC TGCTGCTCTCGATAACTTGAATTTTTGGCACAGAAATCTCACGGATCCCATGATAATTGATGTACTACTTGTTCGCCAACCGTCTACTCCGTCTACATCC ATGGACAATTTGTATGCTGGGACATCTGTGGAGACAGTTATAGAGAGGTGGGTTGTTCAGTATGAGTCCCTGCGGGTTATGCCTCCCCAGACCGGTGAAA ATTCCGCCTCTTACAAGAAGACATATAAGAAGTCCATCATACTTTTACGCTCTCTTTACTCTCATATGAGGCTTCTCCCCGCATACAGGGTCTTTCGCCA GCTAAGCTCATCTACTCAAACTTACAATTTCCATATCATTTACAAAGTTTCTTCATTTTGCGAACCGTTCTCCAGGGCTGATGAGGAAGTAATGAAGGAG CTCAGTTTTGTCCCCGTTGAGGCCCTTCCTGGCCGCCTTTGTGTATCTGTGACCTATCGTTCGACACTATCTGATTTCAAGCTTGAGCCCGTGACACCGA TGACACCAAAGATTATAATGGACTATGTCGGTAGCCCTACCACAGATCCTCTTAGGTCTTTACCCTCTTCAGAGAAGGGCGTGGGTGCTACGTCCTTTCT ATTGAGAGGAATGCAACCACATGTTTCTTCTCCTTTTCCACGCCCGCATAGCTGGACAAGCGGCTTCCATAGAGCAGCTCATATGGTGAACCAACCAGTT GGTGGATCTCCGCCAGCTTATCGCACATCTCGCATGCCATGTGATTTTCCGTCCCCCTCTAATGATATTTACGGTCATAGAGTCCAAAACTACAGACCAT CAACTCCTCAAAAGGCCAATTATCATGATGAGTACCAGCTTTCTCCTCCATTCTCATCATCTATGTCCCCTTCTACGCCAACGCACTTCTACAACGGTAG TCCTGTCCTAGCTCGTGATATTTCAGAAACTGCACCCGTTTCTATTCCACTTCCTATATCAGGCGGCAGAAGTTCGAGATACCTTTCTCCTAACTTTTCT GATTCAAGTAGGCATTCTCTTCCACCTTTATCTCCCAGAAGCACAAGGCATGATTCATCATCACAGGAGTCTCCTTCTGGAATTCGATCAATCAAGAAAT TAGAAGCTATAAGGTTTGCAGAGTTAAACTCTGGCAATGTAAATCATTATTCTGGTCAGAAGTTGTTAAAAGATAGCAAAGATGATTCAGGGCGGTTCTC AGGGTTGTTATCTTCTAGTGGCTCTCCACGCGTTGGTTTTTCCAGAAGTTCAAGTAGATTATCTTTCCAAGATGACTTAGATGATGATGATGATTTCTCG TGTCCTTTTGATGTTGATGATGTTGATACATCAGATTCTCATGCCAGTCAGAACCTTTATGGGAAGAAAAACTTGGAGTCCAGTTCCCACACTGCATCAA TAGGGAAAAAATCTCAAGATGCAGCCGTTGGTATCCTTGTTCACATGCTGAGGACAGCACCTCCGCTGCGTCAAGATCCAAGCTGTTACTCATCCCACTC CTTGAGGACTAATGTAGAGGAAGGGATGAGCACAGCTTCTGGGTTTTTTTTGCCGAGAAAGACAGCAGATGCGCTGGAAGAGCTCCGGAGTTACAGAGAA ATGAAAGACCTCTTGCTCTCTAAGAGTGGAACTCGGGTGGTCAGCAAAGAAGAAGCATAA
AA sequence Show only first row Show all	>Potri.012G004400.1 pacid=42782766 polypeptide=Potri.012G004400.1.p locus=Potri.012G004400 ID=Potri.012G004400.1.v4.1 annot-version=v4.1 MDMHGNSHPDSGKLEQIISQFLLKSLHIILDSRIPSLHPHDRSRELSSTSRVKKSDKWFNLVLGDRPAALDNLNFWHRNLTDPMIIDVLLVRQPSTPSTS MDNLYAGTSVETVIERWVVQYESLRVMPPQTGENSASYKKTYKKSIILLRSLYSHMRLLPAYRVFRQLSSSTQTYNFHIIYKVSSFCEPFSRADEEVMKE LSFVPVEALPGRLCVSVTYRSTLSDFKLEPVTPMTPKIIMDYVGSPTTDPLRSLPSSEKGVGATSFLLRGMQPHVSSPFPRPHSWTSGFHRAAHMVNQPV GGSPPAYRTSRMPCDFPSPSNDIYGHRVQNYRPSTPQKANYHDEYQLSPPFSSSMSPSTPTHFYNGSPVLARDISETAPVSIPLPISGGRSSRYLSPNFS DSSRHSLPPLSPRSTRHDSSSQESPSGIRSIKKLEAIRFAELNSGNVNHYSGQKLLKDSKDDSGRFSGLLSSSGSPRVGFSRSSSRLSFQDDLDDDDDFS CPFDVDDVDTSDSHASQNLYGKKNLESSSHTASIGKKSQDAAVGILVHMLRTAPPLRQDPSCYSSHSLRTNVEEGMSTASGFFLPRKTADALEELRSYRE MKDLLLSKSGTRVVSKEEA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49590		ATG13	autophagy-related 13, Autophag...		Potri.012G004400 [exp]	0	1
					Potri.004G011101 [exp]	6.08	0.7906
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.010G213700 [exp]	11.66	0.7867
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Potri.005G124300 [exp]	12.48	0.7493
AT5G57160		ATLIG4	DNA ligase IV (.1)		Potri.018G141900 [exp]	21.90	0.7195	LIG4.1
AT5G65170			VQ motif-containing protein (....		Potri.007G091600 [exp]	22.60	0.7475
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.001G368600 [exp]	22.80	0.7597
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.014G086500 [exp]	22.91	0.7623
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Potri.015G020800 [exp]	27.92	0.7069
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Potri.006G235400 [exp]	28.77	0.7406
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Potri.002G059800 [exp]	31.38	0.7571

Compare expression of checked genes

Potri.012G004400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.