Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24650 263 / 1e-87 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT3G49560 245 / 1e-80 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT2G37410 41 / 0.0004 ATTIM17-2 TRANSLOCASE OF THE INNER MEMBRANE 17, translocase inner membrane subunit 17-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G000600 [exp] 415 / 1e-147 AT5G24650 300 / 6e-103 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.001G360300 [exp] 44 / 7e-05 AT5G55510 254 / 2e-86 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.011G088500 [exp] 43 / 0.0001 AT5G55510 252 / 1e-85 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005289 [exp] 318 / 2e-108 AT5G24650 303 / 1e-103 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10032959 [exp] 307 / 7e-105 AT5G24650 295 / 6e-101 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10015593 [exp] 230 / 6e-74 AT5G24650 218 / 3e-70 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10032913 [exp] 226 / 3e-73 AT5G24650 234 / 6e-77 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10043170 [exp] 42 / 0.0003 AT4G26670 220 / 5e-73 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10032577 [exp] 42 / 0.0004 AT4G26670 221 / 1e-73 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [poplar] [flax] SAM PF00536 [poplar] [flax] SAM_1 SAM domain (Sterile alpha motif) CL0003 [poplar] [flax] PF02466 [poplar] [flax] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Potri.012G004600.3 pacid=42783618 polypeptide=Potri.012G004600.3.p locus=Potri.012G004600 ID=Potri.012G004600.3.v4.1 annot-version=v4.1 ATGAAGGGAATAAAAAGGAAGGATCTCTCCTCTCCTATATATCTCTATCCACATAGTAGCTCGAAGCAGCAGCAGCAACGGCGGGGCGGCAGCAAACAGG GGAAAGCGAAACGGAAAAGAAAAGAAATGGAGCAGCAGCAGGGTAAACAAGGAGTGACGGTGGCCAAACTGTTTCCCAATCAAGACCCAATGAAGTTCGT TCAGTTTAAGTTCAAGGAATTGGAGGATGGCTTCAAGTCTTGGTTGTCCAAGCAATCTTTGCCTGTCGAGGCCGCCGTTGTCACTGCCACCGGCGGTGTT CAGGGCGCTGCCATCGGAGCCATCATGGGTACCCTCACCCCTGACATCTCTTCCTCTATGCCAACTCCCCCTCCTCAGGCCTCTCTCAACCCTCAAGCCA TGGCCTCTCTCAAGCAAGCCCAAGCTTTAGCTGGTGGACCCTTAATACAAGCACGCAATTTTGCTGTAATGACTGGAACCAATGCCGGCATAGCTTGTAT CATGAAGAGATTGCGCGGCAAGGAGGATGTCCAATCTAGCATGGTTGCAGCTTTTGGTTCCGGTGCCATGTTTTCGTTGGTGAGTGGCATGGGTGGCCCA AATCTTGCTACTAATGCAATCACTTCTGGACTTTTCTTTGCATTAGTTCAGGGTGGTCTTTTCAAGTTGGGGGAGAAGTTATCTAAACCACCAGTTGAAG ATTTGTGCTATGCCAGAACAAGATCCATGCTAAATAATCTTGGTCTCCAGAATTATGAAAAGAATTTCAAGAAAGGGTTGTTGACAGATAACACTTTGCC TTTGCTGACCGACAGTGCTCTTAGAGATGTAAGAATCCCTCCTGGACCAAGACTTCTCATTCTTGATCACCTTCGAAGGGACCCGGAGCTGAGAGAGAAG ACATGCAAGCCATGA
AA sequence Show only first row Show all	>Potri.012G004600.3 pacid=42783618 polypeptide=Potri.012G004600.3.p locus=Potri.012G004600 ID=Potri.012G004600.3.v4.1 annot-version=v4.1 MKGIKRKDLSSPIYLYPHSSSKQQQQRRGGSKQGKAKRKRKEMEQQQGKQGVTVAKLFPNQDPMKFVQFKFKELEDGFKSWLSKQSLPVEAAVVTATGGV QGAAIGAIMGTLTPDISSSMPTPPPQASLNPQAMASLKQAQALAGGPLIQARNFAVMTGTNAGIACIMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGP NLATNAITSGLFFALVQGGLFKLGEKLSKPPVEDLCYARTRSMLNNLGLQNYEKNFKKGLLTDNTLPLLTDSALRDVRIPPGPRLLILDHLRRDPELREK TCKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24650			Mitochondrial import inner mem...		Potri.012G004600 [exp]	0	1
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Potri.011G118000 [exp]	1.73	0.8573
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Potri.017G076000 [exp]	2.44	0.8281
AT2G02880			mucin-related (.1)		Potri.015G004400 [exp]	3.87	0.7955
AT5G63460			SAP domain-containing protein ...		Potri.012G096900 [exp]	4.00	0.7949
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Potri.002G198600 [exp]	12.48	0.8158
AT3G01740			Mitochondrial ribosomal protei...		Potri.001G335600 [exp]	25.82	0.7866
AT4G04955		ATALN	allantoinase (.1)		Potri.004G041800 [exp]	32.86	0.7598
AT5G30495			Fcf2 pre-rRNA processing prote...		Potri.008G206400 [exp]	34.58	0.7733
AT5G14590			Isocitrate/isopropylmalate deh...		Potri.001G347800 [exp]	38.72	0.7911
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Potri.002G175000 [exp]	45.95	0.7399	Pt-RSP31.2

Compare expression of checked genes

Potri.012G004600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.