Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54090 847 / 0 DNA mismatch repair protein MutS, type 2 (.1) AT1G65070 219 / 8e-60 DNA mismatch repair protein MutS, type 2 (.1.2) AT3G24320 99 / 5e-21 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT3G18524 87 / 3e-17 ATMSH2, MSH2 MUTS homolog 2 (.1) AT3G24495 79 / 7e-15 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT4G25540 79 / 1e-14 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT4G02070 78 / 2e-14 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT4G17380 75 / 2e-13 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G20475 62 / 1e-09 ATMSH5 MUTS-homologue 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G041900 [exp] 266 / 3e-76 AT1G65070 924 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Potri.010G065000 [exp] 95 / 1e-19 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Potri.014G121701 [exp] 90 / 4e-18 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.015G142900 [exp] 89 / 6e-18 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.012G060000 [exp] 86 / 6e-17 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.006G156314 [exp] 76 / 1e-13 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G159200 [exp] 75 / 1e-13 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.001G156200 [exp] 68 / 2e-11 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.011G089500 [exp] 65 / 2e-10 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032917 [exp] 990 / 0 AT5G54090 808 / 0.0 DNA mismatch repair protein MutS, type 2 (.1) Lus10015589 [exp] 978 / 0 AT5G54090 791 / 0.0 DNA mismatch repair protein MutS, type 2 (.1) Lus10025647 [exp] 259 / 1e-73 AT1G65070 892 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Lus10018187 [exp] 255 / 4e-72 AT1G65070 899 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Lus10014462 [exp] 88 / 2e-17 AT3G24320 1506 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Lus10005743 [exp] 88 / 2e-17 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10027452 [exp] 84 / 7e-17 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10042967 [exp] 83 / 7e-16 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10023718 [exp] 83 / 9e-16 AT3G24320 1594 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Lus10010010 [exp] 79 / 2e-14 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00488 [poplar] [flax] MutS_V MutS domain V
Representative CDS sequence Show only first row Show all	>Potri.012G005000.8 pacid=42783869 polypeptide=Potri.012G005000.8.p locus=Potri.012G005000 ID=Potri.012G005000.8.v4.1 annot-version=v4.1 ATGCTCTCCGCCACTGCCACCGCTGGTGTGGTATTTGGAAGCAATTGGATAACATTACTTACCACTCCTACTAGATTATTATATTTTTGTCATAGCGCTG CTGCTGCTGCTGTTTCTGATTTCCCACTAACTATCAATATCACTCGTAGACCTCGTCATAGATTGCGCAAAAATTCTTGCTCCTTCTCTTCCACCTCCTC CCCGTTCCCGTCAATTTTAACAGAACCAGACGACGGCAATCAGAAGAAATCTGTTAATGACGCTCGATATTCAAGTCTAAGAGTATTGGAATGGGATAAG CTCTGCGACTTGGTTTCGTCCTTCGCCACTACTTCCTTAGGCCGTGAAGCCTGTAAGGAGCAATTATGGTCCCTCAATCACACCTACCATCACAGCTTGA TCCTCTTGAAAGAAACCAACGCCGCTGTCCAAATGCACAACCATGGCGCTTGCCGCTTAGACTTCTCCTCCATTAATCTTCTCTTAGTAAAATCTGGTCT TCGAAATGCTAGACGGGGGGGGTTACCCATCAATGCTAATGAAGCAATGGCTGTTGCTGCTATCCTGGAGTCTGCCTATTTCTTGCAGCTCAATCTCAAA GCTGCAATCAAGGAAGATGCTGATTGGTACAATCGCTTTACGCCTCTTTCACAACTGATAATGGAAATGGTTATCAATATATCATTAGTCAGGGTGATAA AACAAGTTATAGATGAAGATGGCTCTGTCAAAGACTCTGCTAGTTCTGCTTTAAAACGAGCGCGTGATCAGGTTCAGCTACTTGAGAAAAAGCTGTCTCA GTTAATGGACAGCCTGATTAGGAATGAAATGAAAGAGACATCTTTTCTGGAAGTGAGTAACATTGATGGCAGATGGTGTATAAACTCAGGGACTGGTCAG CTGACAAGTTTTAATGGCCTTTTGCTGTCCAGTGATTCAGGAACTGGAAGAATTATAGAGCCACTCTCAGCAGTTCCTTTAAATGATGAGCTGCAACAAG CAAGAGCATCAGTTGCAAAGGCAGAGGCAGATGTGCTTTTGATGTTAACAGAAAAGATGAAAAAGGATCTTGATGACATTGAAAAAGTATCAGACAGTGT AATTCAACTGGACGTGATCAATGCCCGGGCAACTTATAGTCTTTTTTTCAGAGGAGCACCTCCCAGTTTGTATCTTTCAGAAGAACTGGATGGGTCTTTT TCCACTGAAACTTATTTATCAGAAAATGAAACCTTGATGGCATCATTTCCCAAAGAGAGAGAGTGGCTATTGTACATGCCTAAAGCCTATCATCCTTTGA TGCTCCAGCAACATAGACAAAATGTGCAGAAAGCAAAAAAGGAAGGCAGTAATGCTCCTGATGTTTCTGCATTGGAACAAGCTCACCCAGTTCCAGTTGA TTTTTTTATCTCCCATAAAACAAGAGTCCTGACTATAACTGGTCCTAATACCGGGGGCAAAACCATTTGCCTAAAGACAGTTGGATTGGCTGCTATGATG GCAAAATCAGGTCTTCATGTTTTGTCATCTGAATCTGTAGAAATTCCTTGGTTTGATTCTGTTTTTGCTGATATTGGTGATGAACAGTCCTTGTCTCAAT CTCTATCTACCTTCTCTGGCCACTTGAAACAGATAAGTGACATTCGATCTCAATCCACGAGTCAGTCACTGGTGCTACTAGATGAAGTTGGTGCAGGTAC AAATCCTCTTGAAGGAGCTGCATTGGGGATGTCATTGCTGGAATCTTTTGCTGATAGTGGTGCCTTACTGACAATAGCTACAACACATCATGGTGAACTT AAGTCCCTGAAGTACAGTAATGATGCCTTTGAAAATGCTTGTATGGAGTTTGATGAAGTGAACTTAAAGCCGACTTACAAGATTCTCTGGGGAGTACCAG GTCGTTCAAATGCAATTAATATATCTGAAAAATTGGGACTCCCCAGTGTAGTTGTTTCTAATGCCCGAGAACTTCATGGTGCTGCTAGTGCAGAGATTAA TGAGGTCATAATTGATATGGAAAGGTTCAAGCAAGATAGTCAAGAGCTTTTGCATGAGGCACGGCATCATCTGATGCTCTCAAAAAATCTTCATGAAAAA CTAAAGCTTGCCAGAAGGAAGATAAAGGAGCATGGTACTGAACAGAGATACCGTAAGATGCGGCAAATATCTGAGGCTGCATCAATGGCTCGTTCTATCC TTCACAAGAAAGTGCGGCAGCTTCGTGCACATGCAACACAAACTTTTCAGCCTACAGCAGATCAAAAACAACTGTCGACAAGTGATAGCCGGTTTACTGC AGAGGCTAAGAATGGACGGCCTACAGAGAGTATGAGTACTTCAGTAGTTGAAATCAATAAACAACCATCAGCAGCAATGACTGAGCTTCCTGAGGTTGGT GATATGGTGCAAGTTTCTTCGCTAGGAAGGAAAGCAACAGTTTTGAGAGTGGATCGATCTAAGGAAGAAATACTAGTTCAAGCTGGCAACATGAAGCTGA AGTTGAAACTTGCTGAAATAGGAGTTAAATAG
AA sequence Show only first row Show all	>Potri.012G005000.8 pacid=42783869 polypeptide=Potri.012G005000.8.p locus=Potri.012G005000 ID=Potri.012G005000.8.v4.1 annot-version=v4.1 MLSATATAGVVFGSNWITLLTTPTRLLYFCHSAAAAAVSDFPLTINITRRPRHRLRKNSCSFSSTSSPFPSILTEPDDGNQKKSVNDARYSSLRVLEWDK LCDLVSSFATTSLGREACKEQLWSLNHTYHHSLILLKETNAAVQMHNHGACRLDFSSINLLLVKSGLRNARRGGLPINANEAMAVAAILESAYFLQLNLK AAIKEDADWYNRFTPLSQLIMEMVINISLVRVIKQVIDEDGSVKDSASSALKRARDQVQLLEKKLSQLMDSLIRNEMKETSFLEVSNIDGRWCINSGTGQ LTSFNGLLLSSDSGTGRIIEPLSAVPLNDELQQARASVAKAEADVLLMLTEKMKKDLDDIEKVSDSVIQLDVINARATYSLFFRGAPPSLYLSEELDGSF STETYLSENETLMASFPKEREWLLYMPKAYHPLMLQQHRQNVQKAKKEGSNAPDVSALEQAHPVPVDFFISHKTRVLTITGPNTGGKTICLKTVGLAAMM AKSGLHVLSSESVEIPWFDSVFADIGDEQSLSQSLSTFSGHLKQISDIRSQSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFADSGALLTIATTHHGEL KSLKYSNDAFENACMEFDEVNLKPTYKILWGVPGRSNAINISEKLGLPSVVVSNARELHGAASAEINEVIIDMERFKQDSQELLHEARHHLMLSKNLHEK LKLARRKIKEHGTEQRYRKMRQISEAASMARSILHKKVRQLRAHATQTFQPTADQKQLSTSDSRFTAEAKNGRPTESMSTSVVEINKQPSAAMTELPEVG DMVQVSSLGRKATVLRVDRSKEEILVQAGNMKLKLKLAEIGVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54090			DNA mismatch repair protein Mu...		Potri.012G005000 [exp]	0	1
AT5G13730		SIGD, SIG4	sigma factor 4 (.1)		Potri.009G057200 [exp]	1.73	0.9581
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Potri.007G123900 [exp]	2.00	0.9693
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Potri.014G170300 [exp]	4.89	0.9336
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.005G222300 [exp]	5.09	0.9276
AT1G05700			Leucine-rich repeat transmembr...		Potri.019G094250 [exp]	9.79	0.9260
AT2G38330			MATE efflux family protein (.1...		Potri.016G126000 [exp]	11.22	0.9329
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Potri.011G009600 [exp]	11.61	0.9362
AT1G01320			Tetratricopeptide repeat (TPR)...		Potri.014G098600 [exp]	12.00	0.9353
AT3G15354		SPA3	SPA1-related 3 (.1)		Potri.011G119500 [exp]	12.40	0.9287	SPA3.2
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.003G140800 [exp]	13.41	0.9269

Compare expression of checked genes

Potri.012G005000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.