Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27585 464 / 2e-162 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G54100 435 / 3e-151 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT3G01290 75 / 6e-15 AtHIR2 hypersensitive induced reaction 2, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G51570 61 / 6e-10 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G62740 60 / 6e-10 AtHIR4, ATHIR1 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT1G69840 51 / 5e-07 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G001900 [exp] 671 / 0 AT4G27585 499 / 2e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G009800 [exp] 550 / 0 AT4G27585 382 / 3e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G011345 [exp] 429 / 4e-150 AT4G27585 268 / 2e-87 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G010001 [exp] 403 / 2e-140 AT4G27585 245 / 6e-79 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.017G078000 [exp] 58 / 2e-09 AT5G62740 518 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.017G078100 [exp] 58 / 3e-09 AT5G62740 488 / 3e-176 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G130600 [exp] 54 / 7e-08 AT5G51570 510 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G129000 [exp] 51 / 5e-07 AT5G51570 480 / 4e-173 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032909 [exp] 478 / 6e-168 AT4G27585 498 / 4e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015597 [exp] 352 / 2e-117 AT4G27585 383 / 7e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015356 [exp] 59 / 2e-09 AT5G62740 506 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10033099 [exp] 57 / 5e-09 AT5G62740 533 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10007268 [exp] 57 / 9e-09 AT5G62740 510 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015032 [exp] 56 / 2e-08 AT5G51570 532 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10004268 [exp] 55 / 3e-08 AT5G62740 535 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10038907 [exp] 54 / 1e-07 AT5G51570 529 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10036715 [exp] 52 / 4e-07 AT1G69840 516 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) Lus10037213 [exp] 52 / 4e-07 AT1G69840 514 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [poplar] [flax] SPFH PF01145 [poplar] [flax] Band_7 SPFH domain / Band 7 family CL0433 [poplar] [flax] PF16200 [poplar] [flax] Band_7_C C-terminal region of band_7
Representative CDS sequence Show only first row Show all	>Potri.012G005500.3 pacid=42783803 polypeptide=Potri.012G005500.3.p locus=Potri.012G005500 ID=Potri.012G005500.3.v4.1 annot-version=v4.1 ATGTGGAGGAGGAGGAGGAGTCATTTATTACTCAACAACGCCGTAAGAACCTCCCTCCACCTCTCCTCCTTATCGGCTTCCACCGCTTCCAGAGGAAGAA CCCTCCTCACTCCCTCCTCCAATTCTCCCTTATTTAAACCCCCTTCTTCTCACTTAGCCCAAAACAATCGCCTTTCCTCTCCTCTCTCCTCCACCATCTC CGTCCGCCTCCTCCGCACCGGCCGCGACCCCTTCACCAGTTTTGAGATTACGCCACCTGTGAATTGGGGGATACGGATTGTGCCGGAGAAGAAAGCGTTT GTGGTAGAGAGATTTGGAAAGTACTTGAAGACGCTGCCATCTGGAATCCATTTCTTGATTCCTCTTGTCGATCGAATCGCTTATGTTCACTCTTTGAAGG AAGAGGCTATTCAGATTCCTGATCAATCTGCTATTACCAAAGACAATGTCAGCATTCTTATCGGCGGCGTCCTCTATGTCAAGATTGTGGATCCTAAGCT TGCCTCTTATGGTGTTGAGAATCCCATCTATGCTGTCGTTCAACTTGCCCAGACAACTATGCGTAGTGAGCTTGGTAAGATTACTCTTGACAAGACCTTT GAAGAAAGAGACACTCTCAACGAAAAGATTGTGGAGGCCATCAATGTGGCTGCAACAGACTGGGGTCTCCGATGTCTTCGTTATGAAATAAGGGATATAT CTCCTCCACGTGGGGTGAAGCAAGCTATGGAGATGCAGGCAGAAGCAGAACGTAGAAAGAGAGCTCAAATTCTTGAGTCTGAAGGAGAGAGACAGGCCAA TATTAATATTGCTGATGGTCATAAGAGTGCTCAGATCTTGGCATCACAAGGAGAGAAACAAGCTCTCATCAACAAAGCACAAGGTGAGGCTGAAGCCATC ATTGCTAAAGCACAAGCAACAGCCAAAGGAATTGCCATTGTGTCAGAGAATATTAAAAAGAGTGGGGGAATTGAGGCGGCTAGTTTGAAAATTGCTGAGC AATATGTGGGAGCTTTTGGTAACATTGCCAAAGAGGGGACAACAATTCTGCTTCCCAGTGCTACTGGCAATCCTGCCAATATTATGGCTCAAGCTTTCAC TATGTATAAGAACCTGCTCGGTAATGTTTCCAGTGGTGGTCCTAATGAATCTTCTTCATTAGTGGAAGGTGCATCTGTTGAACCTGTGGATCCAGCCACA ATTATAGAGGATAATGCTACCTCCCTTGAAACTAAAGCCAAGGATGAGAGTGCCAGAGATAATGGTGAAACAGGATTTTCACTTCAGAGCAGCAAAAAAG GGAAAGCTGAGTAG
AA sequence Show only first row Show all	>Potri.012G005500.3 pacid=42783803 polypeptide=Potri.012G005500.3.p locus=Potri.012G005500 ID=Potri.012G005500.3.v4.1 annot-version=v4.1 MWRRRRSHLLLNNAVRTSLHLSSLSASTASRGRTLLTPSSNSPLFKPPSSHLAQNNRLSSPLSSTISVRLLRTGRDPFTSFEITPPVNWGIRIVPEKKAF VVERFGKYLKTLPSGIHFLIPLVDRIAYVHSLKEEAIQIPDQSAITKDNVSILIGGVLYVKIVDPKLASYGVENPIYAVVQLAQTTMRSELGKITLDKTF EERDTLNEKIVEAINVAATDWGLRCLRYEIRDISPPRGVKQAMEMQAEAERRKRAQILESEGERQANINIADGHKSAQILASQGEKQALINKAQGEAEAI IAKAQATAKGIAIVSENIKKSGGIEAASLKIAEQYVGAFGNIAKEGTTILLPSATGNPANIMAQAFTMYKNLLGNVSSGGPNESSSLVEGASVEPVDPAT IIEDNATSLETKAKDESARDNGETGFSLQSSKKGKAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.012G005500 [exp]	0	1
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.012G011345 [exp]	2.44	0.7734
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.012G009800 [exp]	3.00	0.7539
AT4G01040			Glycosyl hydrolase superfamily...		Potri.014G096700 [exp]	6.48	0.7219
AT3G26935			DHHC-type zinc finger family p...		Potri.017G063800 [exp]	6.92	0.7422
AT2G34520		RPS14	mitochondrial ribosomal protei...		Potri.001G424950 [exp]	13.49	0.6962
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Potri.009G025900 [exp]	15.23	0.6226
AT5G64200		ATSC35, At-SC35	ARABIDOPSIS THALIANA ORTHOLOG ...		Potri.002G095800 [exp]	15.49	0.6612
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Potri.008G076800 [exp]	18.43	0.6505
AT3G11760			unknown protein		Potri.016G067600 [exp]	22.58	0.6640
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Potri.001G311600 [exp]	27.56	0.6494

Compare expression of checked genes

Potri.012G005500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.