Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45616 379 / 3e-115 AtRLP6 receptor like protein 6 (.1) AT5G27060 366 / 1e-110 AtRLP53 receptor like protein 53 (.1) AT1G47890 365 / 5e-110 AtRLP7 receptor like protein 7 (.1) AT3G05660 349 / 2e-105 AtRLP33 receptor like protein 33 (.1) AT3G11010 348 / 6e-105 AtRLP34 receptor like protein 34 (.1) AT2G15080 343 / 5e-102 AtRLP19 receptor like protein 19 (.1.2) AT4G13920 322 / 3e-95 AtRLP50 receptor like protein 50 (.1) AT3G25010 316 / 4e-93 AtRLP41 receptor like protein 41 (.1) AT2G33060 301 / 2e-88 AtRLP27 receptor like protein 27 (.1) AT2G32680 296 / 7e-86 AtRLP23 receptor like protein 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G010101 [exp] 1471 / 0 AT1G45616 379 / 6e-115 receptor like protein 6 (.1) Potri.012G009900 [exp] 1412 / 0 AT1G45616 358 / 2e-107 receptor like protein 6 (.1) Potri.012G010300 [exp] 1396 / 0 AT3G11080 385 / 3e-118 receptor like protein 35 (.1) Potri.012G007901 [exp] 1317 / 0 AT3G25010 300 / 6e-88 receptor like protein 41 (.1) Potri.012G025400 [exp] 1140 / 0 AT1G45616 399 / 7e-122 receptor like protein 6 (.1) Potri.012G013435 [exp] 1130 / 0 AT3G11080 367 / 6e-112 receptor like protein 35 (.1) Potri.012G028500 [exp] 1117 / 0 AT1G45616 371 / 6e-112 receptor like protein 6 (.1) Potri.012G007932 [exp] 1104 / 0 AT1G45616 370 / 6e-112 receptor like protein 6 (.1) Potri.012G031251 [exp] 1104 / 0 AT1G45616 380 / 1e-115 receptor like protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026415 [exp] 370 / 2e-111 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10003389 [exp] 360 / 6e-108 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10014910 [exp] 347 / 1e-104 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10042239 [exp] 349 / 3e-103 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10006825 [exp] 328 / 4e-96 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10032335 [exp] 319 / 2e-94 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10003387 [exp] 318 / 2e-92 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10024721 [exp] 311 / 2e-91 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10016337 [exp] 302 / 4e-87 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 286 / 5e-81 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G005600.3 pacid=42782782 polypeptide=Potri.012G005600.3.p locus=Potri.012G005600 ID=Potri.012G005600.3.v4.1 annot-version=v4.1 ATGGGGTTTTCACCACTGTCCCTCTCTCAATTTCTCTCTTCCATTCTGTTTCTCTTCCATTTTCACGCAACAATTTCTTCATCAAATTACTCCTCTTCAT CTCATTTCTGTGCTCCTGACCAAAGTCTTTCTTTGCTCCAATTCAAAGAGTCCTTTTCCATTAGTAGCTCTGCTTCAGGGCGTTGCCAGCATCCCAAGAC AGAGTCGTGGAAAGAGGGTACAGACTGCTGTTTGTGGGATGGGGTCACTTGTGACATGAAAACCGGGCAAGTCACTGCACTGGACCTTGCTTGCAGCATG CTTTATGGCACCCTCCATCCCAATAGCACCCTCTTCTCCCTGCATCATCTTCAAAAGCTCGACCTCTCTGACAATCATTTCAATAGCTCCCGTATTTCTT CTCGATTTGGCCAGTTCTCCAACCTGACACATCTTAACCTAAACTACTCAGTCTTTGCAGGTCAAGTTCCGTCGGAAATCTCTCGGCTCTCCAAATTGGT TTCACTTGATCTCTCTGGAGACAGAAATGACTATCTAAGTCTAGAACCAATTTCTTTGGACAAGCTTGTTCGAAATCTAACCCAGCTTAGAGAACTCGAT CTGAGTCGGGTAAACATGTCATTGGTTGTACCCAATTCCTTGATGAATCTGTCTTCTTCTTTGTCATCACTCATACTCAATTCGTGTAGATTGCAAGGAA AATTCCCATTCTCAATGAGAAAATTTAAGCACCTCCAGCAGTTGGAACTTGCAGAAAACAATCTTACAGGTCCACTTCCATATGATCTTGGGCAACTCAC TGAGTTGGTTTCACTTGCTCTCTCTGGAAACGAAAACGACCATCTAAGTCTAGAACCAATTTCTTTTGACAAGCTTGTTCAAAACCTAACCCAGCTTAGA GAACTCGATCTGAGTTGGGTGAACATATCATTGGTTGCACCCAATTCCTTGATGAATCTGTCTTCTTCTTTGTCATCACTCATACTCTATTCCTGTGGAC TGCAAGGAAAATTCCCATCCTCAATGAGAAAATTTAAGCACCTCCAGCAGTTGGATCTTAGAAAAAACAATCTTACAGGTTCAATTCCAGATGATCTTGG GCAACTCACTGAGTTGGTTTCAATTGATCTCTCTTTCAATGACTATTTGAGTGTAGAACCAAGTTCTTTTGACAAGACTATTCAAAACCTAACCAAGCTA AGAGGACTCCGTTTGGGTTATGTAAATATGCCTTTGGTCATACCTAATTCCTTGGCGAATCTGTCATCATCCTTGTCAGCTCTTTCCCTTTGGGGTTGTG GATTGCATGGGAAGTTCCCAGATAACATCTTTCTCCTACCAAACCTTGAAGAGCTTGATTTGACATACAACGACGACCTCACTGGCTCTTTTCCTTCATC CAATGTGAGTAATGTCCTCTGGTTATTGGGTCTTACTCGTACGAGAATTTCAGTTTCTTTAGAAAATGACTTCTTCAATAATCTAAAGTTGTTGGAAGTT TTGGTTCTTAGAAACTCTAATATCACAAGGTCAAATCTGTCCCTTATTGGTGATCTCACACATCTCACTCGTTTAGATCTCGCAGGTAGCAATTTGAGCG GTCAGGTTCCATCATCACTTACAAATCTTGTGCAACTTCAATCCTTGTATCTTGATAACAATAATTTTTCAGGTAGGATTCCAGAGTTTTTAGGTAACCT TACCCTCCTTGAAAATTTAGGTTTATCCAATAATCAACTCTCAGGACCTATCCCTTCTCAAATAAGTACTCTTTCATTGAGATTGTTTGATATGAGCAAA AACAACTTGCATGGTCCAATCCCAAGTTCAATTTTCAAACAAGAGAACCTGGAAGCCCTTTCTCTTGCATCCAACAGTAAATTAACAGGTGAAATTTCTT CCTCTATTTGCAAGCTTAAAGTCCTTCAACTCCTTGATTTGTCCAACAACAGCTTGAGTGGTTTTATACCACAATGTTTAGGGAACTTTAGCAACTCTCT CTCAGTTTTGAATCTTGGCATGAATAATCTTCAAGGCACTATCTTTTCACCATTTTCAAAAGGGAATAACTTGAAATATCTCAACCTAAATGGCAATGAA TTGGAAGGGAAAATACCATCGTCTATCATCAACTGCATAATGCTACAAGTTCTTGATCTTGGTGACAATAAAATTGAGGACACATTTCCCTATTTTCTAG AAACGCTTCCAGAGCTCTATATCCTTGCCCTAAAGTCCAATAAACTCCATGGTTTTGTGAGTAGTCCGACTACTAAAAATTCATTCTCCAAATTGCGGGT CTTTGACATCTCCAACAATAATTTGAGTGGACCTTTACCAATAGGATATTTCAATAGTTTTGAAGCAATGATGGCCTATGATCAAAATCCATTTTACATG ATGGCCTATTCCATAAAAGTGACATGGAAAGGGGTTGAGATTGAGTTCGAGAAAATCCAAAGCACTCTTAGAATACTTGATTTGTCAAACAACAGTTTCA CCGGAGAGATTCCAAAGGAGATCGGAAAGCTTAAAGCAGTTCAACAACTCAACCTCTCTCATAATTCCCTTACAGGCCATATTCAATCATCATTTGGAAT GTTGACCTATCTGGAATCATTAGATTTGTCTTCGAATTTGCTTACCGGAAGGATTCCAGTACAGTTGGCAGATCTAACATTTCTTGCAGTCTTAGACCTT TCACATAACCGGCTTAAGGGGGCCATACCCACTGGAAAGCAGTTCAACACGTTTAATGCAAGCTCATTTGAAGGAAACTTGGACTTATGTGGATTCCCCA TGCCAAAAGAATGCAATAATGACGAGGCACCACCATTGCAGCCATCAAACTTTCACGATGGAGATGATTCAAAATTCTTTGGAGAAGGATTTGGATGGAA AGCTGTGGCAATAGGGTATGGAAGTGGGTTTGTGTTTGGAGTCACAATGGGATACGTTGTGTTCAGAACAAGAAAACCAGCATGGTTTCTGAAAGTGGTT GAAGATCAATGGAATCTGAAGGCAAGAAGAACGAAGAAGAATGCTCGTAGGAATGGTGCAAGAAGAAACTAA
AA sequence Show only first row Show all	>Potri.012G005600.3 pacid=42782782 polypeptide=Potri.012G005600.3.p locus=Potri.012G005600 ID=Potri.012G005600.3.v4.1 annot-version=v4.1 MGFSPLSLSQFLSSILFLFHFHATISSSNYSSSSHFCAPDQSLSLLQFKESFSISSSASGRCQHPKTESWKEGTDCCLWDGVTCDMKTGQVTALDLACSM LYGTLHPNSTLFSLHHLQKLDLSDNHFNSSRISSRFGQFSNLTHLNLNYSVFAGQVPSEISRLSKLVSLDLSGDRNDYLSLEPISLDKLVRNLTQLRELD LSRVNMSLVVPNSLMNLSSSLSSLILNSCRLQGKFPFSMRKFKHLQQLELAENNLTGPLPYDLGQLTELVSLALSGNENDHLSLEPISFDKLVQNLTQLR ELDLSWVNISLVAPNSLMNLSSSLSSLILYSCGLQGKFPSSMRKFKHLQQLDLRKNNLTGSIPDDLGQLTELVSIDLSFNDYLSVEPSSFDKTIQNLTKL RGLRLGYVNMPLVIPNSLANLSSSLSALSLWGCGLHGKFPDNIFLLPNLEELDLTYNDDLTGSFPSSNVSNVLWLLGLTRTRISVSLENDFFNNLKLLEV LVLRNSNITRSNLSLIGDLTHLTRLDLAGSNLSGQVPSSLTNLVQLQSLYLDNNNFSGRIPEFLGNLTLLENLGLSNNQLSGPIPSQISTLSLRLFDMSK NNLHGPIPSSIFKQENLEALSLASNSKLTGEISSSICKLKVLQLLDLSNNSLSGFIPQCLGNFSNSLSVLNLGMNNLQGTIFSPFSKGNNLKYLNLNGNE LEGKIPSSIINCIMLQVLDLGDNKIEDTFPYFLETLPELYILALKSNKLHGFVSSPTTKNSFSKLRVFDISNNNLSGPLPIGYFNSFEAMMAYDQNPFYM MAYSIKVTWKGVEIEFEKIQSTLRILDLSNNSFTGEIPKEIGKLKAVQQLNLSHNSLTGHIQSSFGMLTYLESLDLSSNLLTGRIPVQLADLTFLAVLDL SHNRLKGAIPTGKQFNTFNASSFEGNLDLCGFPMPKECNNDEAPPLQPSNFHDGDDSKFFGEGFGWKAVAIGYGSGFVFGVTMGYVVFRTRKPAWFLKVV EDQWNLKARRTKKNARRNGARRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G005600 [exp]	0	1
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.005G103200 [exp]	4.24	0.8903
AT3G46400			Leucine-rich repeat protein ki...		Potri.012G002900 [exp]	4.47	0.8940
					Potri.019G110602 [exp]	6.00	0.8749
AT2G25410			RING/U-box superfamily protein...		Potri.001G154500 [exp]	10.39	0.8431
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.015G086200 [exp]	11.40	0.7851
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Potri.015G069600 [exp]	11.83	0.8886	EDS1.2
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013400 [exp]	13.49	0.8545
AT4G35840			RING/U-box superfamily protein...		Potri.005G244800 [exp]	18.65	0.8299
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.018G120827 [exp]	24.89	0.8138
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G012500 [exp]	32.86	0.8097

Compare expression of checked genes

Potri.012G005600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.